PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07241

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 318aa MW: 35603.6 Da PI: 10.2468

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.6	2.8e-17	17	105	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e +aLi + ++++ +l+r++lk+++W++v+ + +++++qC++k+e+l+kry+ +k++++ r +++ s+++++ ++ Ro05_G07241 17 CWTDDEAHALISVFKDKWCSLGRTNLKANDWDDVATTVaarfPLVSPSKTAVQCRHKMEKLRKRYRSEKQRASAR-PGRFSSWALYLFMD 105 8***********************************533333345899*********************98.78888999997776 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MSSATQTTSH RRVPPPCWTD DEAHALISVF KDKWCSLGRT NLKANDWDDV ATTVAARFPL 60 VSPSKTAVQC RHKMEKLRKR YRSEKQRASA RPGRFSSWAL YLFMDDLESE SAKLNSGSDP 120 DHKTRKGGVE FGVHRKAEGN SSFLAALDEF VSQGTDGASG FPVQSLGHRN LGPLEFTTKS 180 YGKSNEQFNP KLKLKNDMNH GVGTRIGFSE KFRGDWDSNA VGFKDSGGSS SLSRTVKKVD 240 PIEEMVSSIE LLGEKYVKVE KRKMEMAREI VMMQMDMEMK QNQVIMESQQ QIVNACVSAL 300 LESKKKKKKK IKVVSPGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	310	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-47	Trihelix family protein