PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G04577

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 424aa MW: 48067 Da PI: 4.3664

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G04577	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	51	4.6e-16	25	161	6	128
NAM 6 rFhPtdeelvveyLkkkvegkk...leleevikevdiykv...ePwdLpk...kvkaeekew.yfFskrdkkya..tgkrknr.atksgyWkatgkdk 90 F+Ptd +lv +yL +k+ + + +++++e+diy + Pwd+ + +k ++e yfFs+ +k + +gkr++r + g+W++t k Ro05_G04577 25 TFKPTDAQLVGHYLYNKMMMVPggnGKQKHTFPELDIYGAagmVPWDIWNsykPIKLAHQEFlYFFSRVKKLGNngKGKRSSRrVGCGGTWSETEPVK 122 5**************9887776545546699999997533376424434445555549999888866622567877746669****** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ +e g + + + ++++ +++ W+m+e+++ Ro05_G04577 123 LVYVDgIQEPFGKMRKFRYENKDKAFEHNAAWMMDEFSI 161 9744556999999999999999999********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MASSSSSGCS GFMSLEELEW GVVKTFKPTD AQLVGHYLYN KMMMVPGGNG KQKHTFPELD 60 IYGAAGMVPW DIWNSYKPIK LAHQEFLYFF SRVKKLGNNG KGKRSSRRVG CGGTWSETEP 120 VKLVYVDGIQ EPFGKMRKFR YENKDKAFEH NAAWMMDEFS IDHFSVKSSN LVLCRLKMND 180 NNNKRKRKFV EDEEENARRT KSFKTEEQVP SHSHEQQQQL PEFDPREVFD IDDLLYSDSV 240 DEQVDEEQGS TCAQQQQIPS HHCDNNYNCA TDDLITPVYE TQHLQLEGST DPIDFASEEI 300 GGGDTLAPAL SEQHGCSSSL TSQLQSNPTV EEDTYPVQPL PHIGSEWHQP IDQNGLVISE 360 AQGSFGIAMQ QQLPEDQAFS FSSDNDLEDM IPIDCAFSSY FNSDDFSYFN FGDQYLWGGD 420 DIET

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MASSSSSGCS GFMSLEELEW GVVKTFKPTD AQLVGHYLYN KMMMVPGGNG KQKHTFPELD  60
IYGAAGMVPW DIWNSYKPIK LAHQEFLYFF SRVKKLGNNG KGKRSSRRVG CGGTWSETEP  120
VKLVYVDGIQ EPFGKMRKFR YENKDKAFEH NAAWMMDEFS IDHFSVKSSN LVLCRLKMND  180
NNNKRKRKFV EDEEENARRT KSFKTEEQVP SHSHEQQQQL PEFDPREVFD IDDLLYSDSV  240
DEQVDEEQGS TCAQQQQIPS HHCDNNYNCA TDDLITPVYE TQHLQLEGST DPIDFASEEI  300
GGGDTLAPAL SEQHGCSSSL TSQLQSNPTV EEDTYPVQPL PHIGSEWHQP IDQNGLVISE  360
AQGSFGIAMQ QQLPEDQAFS FSSDNDLEDM IPIDCAFSSY FNSDDFSYFN FGDQYLWGGD  420
DIET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	6e-07	NAC family protein