PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G04576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 38375.1 Da PI: 5.3914 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.4 | 2e-21 | 6 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p+G+rFhP d+elv +yL+k+ v g++++ +v++++ d y ePw + ++ + + + +yfF++r+k ++t kr r++ sg+W+ + kev Ro05_G04576 6 PVGVRFHPLDHELVGYYLHKRaVMGDQFRP-NVVSDCpDFYGEnEPWVIWDMYGGgesnKVEALYFFTHRKKLNPTAKRFDRKVGSGTWSGESS-KEV 101 89****************998355555666.89999999985449**99732222221133466*************************97765.677 PP NAM 93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ k+ ++g+ + + + g + ++ W+m+ey++ Ro05_G04576 102 YNTtttthgKSVVIGISRHFRYEGG-CDSHHNGAWLMQEYQM 142 77656666566669******99855.555589********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence |
MELGYPVGVR FHPLDHELVG YYLHKRAVMG DQFRPNVVSD CPDFYGENEP WVIWDMYGGG 60 ESNKVEALYF FTHRKKLNPT AKRFDRKVGS GTWSGESSKE VYNTTTTTHG KSVVIGISRH 120 FRYEGGCDSH HNGAWLMQEY QMTENDITVL CTLRKNPRKL PPPPTTDTAN VIKKRKRIGY 180 GNGNGDGGDQ DHLPRKPKAA RKPKRKETNC DQEQAGSSGL ADQDHQQQLS IVKETNNYEV 240 QNQDQIQHDQ DYYPEPYPDL LDFDEPHYSL DELVASPTPH LLSSLESNEF QSQKDQSSYD 300 DGDNFNLVSN YQSYDSNNFG LVSEDQLYDS NNFSLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 204 | KRKRIGYGNGNGDGGDQDHLPRKPKAARKPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 1e-15 | NAC family protein |