PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03671
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 688aa    MW: 75527.6 Da    PI: 6.6364
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-202681156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ +++t++q+++Le +F+ +++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Ro05_G03671 26 KKRYHRHTANQIQRLEGMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 81
                 678899***********************************************998 PP
2START168.25.5e-532254432206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEEC CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlevis 86 
                  +a  a++el+++ ++++p+W+kss    + +n + + ++f+++ +       ++ea+rasgvv+m+   lv  ++d+++    + + +  a t+evis
  Ro05_G03671 225 IAANAMEELLRLLQSNDPLWMKSStdgrDVLNLESYERIFPRATShlknpnLRIEASRASGVVIMNGLALVDMIMDSNKfgeLFPTIVSMARTIEVIS 322
                  67889********************999999999999999998889********************************77777777777********* PP

                  TTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHH CS
        START  87 sggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllr 182
                  sg    +  +   +lsplvp R+f+f+Ry+ q ++g w+ivdvS d +++++  ++  R+++lpSg+li++++ng+skvtwvehv+ +++ p h l+r
  Ro05_G03671 323 SGMLGSHSDSLQLVLSPLVPtREFYFLRYCHQIEQGNWAIVDVSYDFPRDNQ-FANQCRSHRLPSGCLIQDMPNGYSKVTWVEHVEIEEKAPiHRLYR 419
                  **9999998888888************************************9.8******************************************** PP

                  HHHHHHHHHHHHHHHHHTXXXXXX CS
        START 183 slvksglaegaktwvatlqrqcek 206
                   +++sgla+ga +w+ +lqr ce+
  Ro05_G03671 420 DVIQSGLAFGADRWLVALQRMCER 443
                  **********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    
MEFGSGGGGG GSGGGDHDSS DTHRRKKRYH RHTANQIQRL EGMFKDCPHP DEKQRLQLSR  60
ELGLAPRQIK FWFQNRRTQM KAQHERADNS ALRAENDKIR CENIAIREAL KNVICPSCGV  120
PPINEDNYFD EHKLRMENAQ LKEELDRVSS IAAKYIGRPI SQLPPVQPIH ISSLDLSMSS  180
FGGHGMGGPS LDLDLLPGST SSTMPSLPYQ PTGISDMDKS LMTDIAANAM EELLRLLQSN  240
DPLWMKSSTD GRDVLNLESY ERIFPRATSH LKNPNLRIEA SRASGVVIMN GLALVDMIMD  300
SNKFGELFPT IVSMARTIEV ISSGMLGSHS DSLQLVLSPL VPTREFYFLR YCHQIEQGNW  360
AIVDVSYDFP RDNQFANQCR SHRLPSGCLI QDMPNGYSKV TWVEHVEIEE KAPIHRLYRD  420
VIQSGLAFGA DRWLVALQRM CERFACLMVS GTSTRDLEGV IPSPEGKRSM MKLAQRMVNN  480
FCASISASNG HRWTTIAGIN EVGVRVTIHK STDPGQPNGV VLSAATTIWL PLSPQSVFNF  540
FKDERTRPQW DVLSNGNAVQ EVAHIANGSH PGNCISVLRA FNTSQNNMLI LQESCIDSSG  600
SLVVYCPLDL PAINIAMSGE DPSYIPLLPS GFTISPDGRQ DQGDASASTS SINSASIGGG  660
GGGGSLVTVA FQILVSSLPS AKLNMEST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein