PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03660

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 494aa MW: 55348.9 Da PI: 8.8725

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03660	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Ro05_G03660 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP
2	zf-C2H2	15.9	3.7e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Ro05_G03660 132 WVCEKCSKGYAVQSDYKAHLKTC 154 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MLANNSSSSV PCSEPFSCLE NGNNNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC 180 NMDRLRSESQ AVVLQPACLS RTASSPSPSS ETNFSSRTTP NWHCAPALVV PKPIHDDTKL 240 ILTSPPAGHG IGDRHRTSSK NVNANSLYNL DLQLATTSNA NNPNNIEVSV SSSSKRDVEN 300 HSTQLQLSIG SCDNFGDNHL HYQKNIYIES NRNSPRESST STNDHHRQQM KPAGASTSRL 360 IKEEAREQLR LAMAEKVYAE EARQQAEQQI ELAEQEFANA KRIRQQALAE LDKAQALKEH 420 AVKKINSTIL QITCHACKQQ FQARTRQANS HENSLVFSYM SSARTTTTTE GDRLEINASA 480 TRTDDLAKSS ANPI

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MLANNSSSSV PCSEPFSCLE NGNNNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VRKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRLRSESQ AVVLQPACLS RTASSPSPSS ETNFSSRTTP NWHCAPALVV PKPIHDDTKL  240
ILTSPPAGHG IGDRHRTSSK NVNANSLYNL DLQLATTSNA NNPNNIEVSV SSSSKRDVEN  300
HSTQLQLSIG SCDNFGDNHL HYQKNIYIES NRNSPRESST STNDHHRQQM KPAGASTSRL  360
IKEEAREQLR LAMAEKVYAE EARQQAEQQI ELAEQEFANA KRIRQQALAE LDKAQALKEH  420
AVKKINSTIL QITCHACKQQ FQARTRQANS HENSLVFSYM SSARTTTTTE GDRLEINASA  480
TRTDDLAKSS ANPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-112	C2H2 family protein