PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03639

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-X1

Protein Properties

Length: 1167aa MW: 126418 Da PI: 8.1374

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03639	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	23	1.8e-07	356	374	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+pC+ Ro05_G03639 356 CGRHRCERKCHVGPCDPCQ 374 ******************6 PP
2	zf-NF-X1	21	7.1e-07	419	436	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+++CH+GpC++C Ro05_G03639 419 CGNHVCSEICHPGPCGVC 436 ****************** PP
3	zf-NF-X1	22.3	2.8e-07	477	494	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+Cq+ CH+G+CppC Ro05_G03639 477 CGVHQCQQVCHTGDCPPC 494 ****************** PP
4	zf-NF-X1	17.2	1.1e-05	573	590	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC Ro05_G03639 573 CGQHSCESLCHSGHCPPC 590 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence
MTSQVRSERR SRIPSQPAPR WVPRVSNPTT AAANPPPPVF NSDQPDGNAG QSNNSYSPSE 60 SRQHRGGHNG NGGQINHSFT PSESRQHRGG HNGNGGQSNH SFAPSDSRQH RGGHNGNAGQ 120 TIHSSAPSES RQQHRGGYNG SRGHVGRPMN LIRETEKREN QEWMGMKDSS LPQLVQEIQD 180 KLTKGTVECM ICYDMVRRSA PIWSCSSCYS IFHLNCIKKW ARAPTSIDMS AGKNQGFNWR 240 CPGCQSVQLT SSKEIRYVCF CSKRTDPPSD LYLTPHSCGE HCGKPLEKEV PGRGMSKDDL 300 CPHMCVLQCH PGPCPPCKAF APPRLCPCGK KTITTRCSDR TSVLTCGNHC SKLLDCGRHR 360 CERKCHVGPC DPCQVPFNAS CFCLKKVEVI LCGEMIVKGE VKEDGVFSCS SSCGKKLSCG 420 NHVCSEICHP GPCGVCNLMP WKIKTCHCGK TTLQEERQSC LDPIPTCSQI CDKTLPCGVH 480 QCQQVCHTGD CPPCLVKVTQ KCRCESTSRN VECYKTTMET EKFTCDKPCG RKKNCGRHRC 540 SERCCPLSNS NNHLSGDWDP HLCSMPCGKK LRCGQHSCES LCHSGHCPPC LDTIFTDLTC 600 ACGRTSIPPP LPCGTPPPSC QLPCSVPQPC GHSSSHSCHF GDCPPCSVPV AKECIGGHVV 660 LRNIPCGSRD IKCNKLCGKT RQCGMHACGR TCHPPPCESS SSVESGTKTS CGQTCGAPRR 720 DCRHTCTAPC HPYASCPDAR CDFLVTITCS CGRITANVPC DSGGSTSSFN ADTLFEASII 780 QKLPVPLQPV EATNKKIPLG QRKLMCDDEC AKLERKRVLA DAFDIVPPNL DALHFGETTV 840 SELLSDLFRR DPKWVLSVEE RCKQLVLGKS KGATSGLRVH VFCPMLKEKR DVVRVIADRW 900 KLAVQAAGWE PKRFIVVHAT PKSKVPARVL GVKGTTTVNA SQPPAFDNLV DMDPRLVVSF 960 PDLPRDADIS ALVLRFGGEC ELVWLNDKNA LSVFNDPARA ATAMRRLDNG TLYHGAIAVP 1020 SGASSGSNAW GGLGTAKEGV YTALKGNPWK KAVIRESSWR EDSWGDEEWS GGSADVQASV 1080 WKKEAPIAAS LNRWSVLDSE VALGSSAVSP RIDDSGKQTA GHLNSLPEAN ASGSTSSNAS 1140 GSTSAGKLGG NFADTSEVVD DWEKAYE

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence

MTSQVRSERR SRIPSQPAPR WVPRVSNPTT AAANPPPPVF NSDQPDGNAG QSNNSYSPSE  60
SRQHRGGHNG NGGQINHSFT PSESRQHRGG HNGNGGQSNH SFAPSDSRQH RGGHNGNAGQ  120
TIHSSAPSES RQQHRGGYNG SRGHVGRPMN LIRETEKREN QEWMGMKDSS LPQLVQEIQD  180
KLTKGTVECM ICYDMVRRSA PIWSCSSCYS IFHLNCIKKW ARAPTSIDMS AGKNQGFNWR  240
CPGCQSVQLT SSKEIRYVCF CSKRTDPPSD LYLTPHSCGE HCGKPLEKEV PGRGMSKDDL  300
CPHMCVLQCH PGPCPPCKAF APPRLCPCGK KTITTRCSDR TSVLTCGNHC SKLLDCGRHR  360
CERKCHVGPC DPCQVPFNAS CFCLKKVEVI LCGEMIVKGE VKEDGVFSCS SSCGKKLSCG  420
NHVCSEICHP GPCGVCNLMP WKIKTCHCGK TTLQEERQSC LDPIPTCSQI CDKTLPCGVH  480
QCQQVCHTGD CPPCLVKVTQ KCRCESTSRN VECYKTTMET EKFTCDKPCG RKKNCGRHRC  540
SERCCPLSNS NNHLSGDWDP HLCSMPCGKK LRCGQHSCES LCHSGHCPPC LDTIFTDLTC  600
ACGRTSIPPP LPCGTPPPSC QLPCSVPQPC GHSSSHSCHF GDCPPCSVPV AKECIGGHVV  660
LRNIPCGSRD IKCNKLCGKT RQCGMHACGR TCHPPPCESS SSVESGTKTS CGQTCGAPRR  720
DCRHTCTAPC HPYASCPDAR CDFLVTITCS CGRITANVPC DSGGSTSSFN ADTLFEASII  780
QKLPVPLQPV EATNKKIPLG QRKLMCDDEC AKLERKRVLA DAFDIVPPNL DALHFGETTV  840
SELLSDLFRR DPKWVLSVEE RCKQLVLGKS KGATSGLRVH VFCPMLKEKR DVVRVIADRW  900
KLAVQAAGWE PKRFIVVHAT PKSKVPARVL GVKGTTTVNA SQPPAFDNLV DMDPRLVVSF  960
PDLPRDADIS ALVLRFGGEC ELVWLNDKNA LSVFNDPARA ATAMRRLDNG TLYHGAIAVP  1020
SGASSGSNAW GGLGTAKEGV YTALKGNPWK KAVIRESSWR EDSWGDEEWS GGSADVQASV  1080
WKKEAPIAAS LNRWSVLDSE VALGSSAVSP RIDDSGKQTA GHLNSLPEAN ASGSTSSNAS  1140
GSTSAGKLGG NFADTSEVVD DWEKAYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein