PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03578

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 1004aa MW: 114256 Da PI: 6.5507

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03578	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	424	468	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT++Ed++++ +v++ G ++W+ Ia +g++Rt+ qc r+q Ro05_G03578 424 KPWTADEDKKILYLVQENGVNDWNNIAVSVGTNRTPFQCLARYQR 468 69*****************************************96 PP
2	Myb_DNA-binding	36.8	8.8e-12	477	520	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ +G +W ++a + gRt+ qc +rw k Ro05_G03578 477 REWTKDEDAKLCSAVEAFGECDWQSVACALD-GRTGTQCSNRWKK 520 68***************************.*********98 PP
3	Myb_DNA-binding	44.5	3.6e-14	530	573	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + Ro05_G03578 530 GKWTPEEDKRLIVAQMLFGSKNWNKTAQFVP-GRTQAQCRDRYVN 573 79***************************.*********77 PP
4	Myb_DNA-binding	47.1	5.4e-15	582	625	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l+ a++++G W+++a++++ Rt+++c rw + Ro05_G03578 582 GEWTEEEDSRLIAAIEEYGHC-WSKVAACVP-QRTDNMCWRRWKVL 625 78***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence
MSPFTENENN ELSYYVEEEE DDDDGFNEDM EALRRACMLT GKDPDDINAC KDEEDPNSNQ 60 NDDVDPSSAP NSDSDGLDED LELLRKIENQ FSNTSRCEPL SLKPLSTLLP TSVSDEEEDD 120 YQTLLAIRKR FAAYENDTRE KSAEQVNPSC KAIEETCNEI SGTDAHERSP SLVTHNEEEQ 180 PSTSIEWNQS DSCKPSTSPT KSSGFPKSAL AFLDAINKNR SCQKFLRSKL IQIQAKIEEN 240 NKLKQRVKIL RDFQVHCKRR TGEALSQKKD PRVQLILTKR PRASTDLKAH DRAISAMFYG 300 PEENSHVANY RKASSKFPLS LDRKNWSEVE KKDLQKGLRQ QFQEMVLQSS VDESSYSEPP 360 HGDSNDIDNI LASIKDLEIT PHSIREFLPK VNWEQLASMY VPGRSGGECE ARWLNLEDPL 420 INHKPWTADE DKKILYLVQE NGVNDWNNIA VSVGTNRTPF QCLARYQRSL NASILKREWT 480 KDEDAKLCSA VEAFGECDWQ SVACALDGRT GTQCSNRWKK SLHPTRTRAG KWTPEEDKRL 540 IVAQMLFGSK NWNKTAQFVP GRTQAQCRDR YVNSLEPSLK CGEWTEEEDS RLIAAIEEYG 600 HCWSKVAACV PQRTDNMCWR RWKVLFPHEV LLLREEKRIR KTALIRNFVD REKERPALGP 660 NDFLLRDVTS MKTLTYPRKT GELSQVPKKI RPRRHRNNGQ IFSEEVPGIS NSEVETCDRD 720 DASKKKKQKV LKQRHRRHKD NEPTGECEAV VPVLKNIRPR RHRNNGHIYS EGVHRISNSE 780 VGTCDGDVAL KKKKVLKQCH RRHKGTEPAG ECKAVVPVTN EDDGHKEPTE MSCSDQIIGT 840 SDGDDTIAFF LHKLKKRKLE VADFAVQDCP SSCIQNPEVS SQYEPTVPLD DKPGRQILVR 900 GQKLALQEPM RGVLGINRGS NHEIDDPVIT SLVKKKKSKK RDAQTTKQNS VSNEPDAGEV 960 PKQEVTIKPV KEQVSIGADG DDETDDITLA DWQRQYGRGD IHLR

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence

MSPFTENENN ELSYYVEEEE DDDDGFNEDM EALRRACMLT GKDPDDINAC KDEEDPNSNQ  60
NDDVDPSSAP NSDSDGLDED LELLRKIENQ FSNTSRCEPL SLKPLSTLLP TSVSDEEEDD  120
YQTLLAIRKR FAAYENDTRE KSAEQVNPSC KAIEETCNEI SGTDAHERSP SLVTHNEEEQ  180
PSTSIEWNQS DSCKPSTSPT KSSGFPKSAL AFLDAINKNR SCQKFLRSKL IQIQAKIEEN  240
NKLKQRVKIL RDFQVHCKRR TGEALSQKKD PRVQLILTKR PRASTDLKAH DRAISAMFYG  300
PEENSHVANY RKASSKFPLS LDRKNWSEVE KKDLQKGLRQ QFQEMVLQSS VDESSYSEPP  360
HGDSNDIDNI LASIKDLEIT PHSIREFLPK VNWEQLASMY VPGRSGGECE ARWLNLEDPL  420
INHKPWTADE DKKILYLVQE NGVNDWNNIA VSVGTNRTPF QCLARYQRSL NASILKREWT  480
KDEDAKLCSA VEAFGECDWQ SVACALDGRT GTQCSNRWKK SLHPTRTRAG KWTPEEDKRL  540
IVAQMLFGSK NWNKTAQFVP GRTQAQCRDR YVNSLEPSLK CGEWTEEEDS RLIAAIEEYG  600
HCWSKVAACV PQRTDNMCWR RWKVLFPHEV LLLREEKRIR KTALIRNFVD REKERPALGP  660
NDFLLRDVTS MKTLTYPRKT GELSQVPKKI RPRRHRNNGQ IFSEEVPGIS NSEVETCDRD  720
DASKKKKQKV LKQRHRRHKD NEPTGECEAV VPVLKNIRPR RHRNNGHIYS EGVHRISNSE  780
VGTCDGDVAL KKKKVLKQCH RRHKGTEPAG ECKAVVPVTN EDDGHKEPTE MSCSDQIIGT  840
SDGDDTIAFF LHKLKKRKLE VADFAVQDCP SSCIQNPEVS SQYEPTVPLD DKPGRQILVR  900
GQKLALQEPM RGVLGINRGS NHEIDDPVIT SLVKKKKSKK RDAQTTKQNS VSNEPDAGEV  960
PKQEVTIKPV KEQVSIGADG DDETDDITLA DWQRQYGRGD IHLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-177	MYB family protein