PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03365

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 541aa MW: 61798.9 Da PI: 9.0166

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03365	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.3	1.3e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs +gklye++s Ro05_G03365 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFCS 59 79***********************************************96 PP
2	SRF-TF	95.2	2.9e-30	296	346	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Ro05_G03365 296 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 346 79***********************************************96 PP
3	K-box	103	3.8e-34	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ +++++++qe+ kLk+++e Lq++qR+llGedL++L+ keL+qLe+qLe slk+iRs+K++++l+++++lq++e++l e+nkaLr+klee Ro05_G03365 82 QTVSETQNSYQEYLKLKARVEVLQQSQRNLLGEDLGPLNTKELEQLEHQLEASLKHIRSTKTQFMLDELSDLQNREQMLAETNKALRRKLEE 173 567889***********************************************************************************987 PP
4	K-box	103.1	3.6e-34	374	465	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ + +++ e+akLk+++e Lqr+q h++GedL+sLs+keLq+LeqqL+++lk+iRs+Kn+l++e+i+ lqkk k+lqe+n+ L+kk++e Ro05_G03365 374 DHDQSNGNWTLEHAKLKARVEVLQRNQNHFMGEDLQSLSMKELQNLEQQLDSALKHIRSRKNQLMYESISVLQKKDKALQEQNNLLTKKVKE 465 5788899**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSG RGKLYEFCSS 60 LSMMKTLEKY QRCSYGALEA NQTVSETQNS YQEYLKLKAR VEVLQQSQRN LLGEDLGPLN 120 TKELEQLEHQ LEASLKHIRS TKTQFMLDEL SDLQNREQML AETNKALRRK LEETSLQGAA 180 PLQLAWEGGY GHKAHNNIQQ HNRLPPQSQG FFQPLHGNNS STLQIGYLSI FQIHSTGLRS 240 SSSPDELGKS RPKCEWIHSW VDALTALVFN KDAWNDVRAS SSRINQELLI CFLTLKRIEN 300 KINRQVTFSK RRSGLLKKAH EISVLCDAEV ALIVFSTKGK LFEYSTDSSM ERILERYERY 360 SYAERQLLGN DHGDHDQSNG NWTLEHAKLK ARVEVLQRNQ NHFMGEDLQS LSMKELQNLE 420 QQLDSALKHI RSRKNQLMYE SISVLQKKDK ALQEQNNLLT KKVKEKEKAI AGSAPQAQAQ 480 AQAQAQWEQM QKQSLDSASG DYDQDEETPP TPPLQHRAAA ADAAANSNTL LPPWMLRHLN 540 E

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSG RGKLYEFCSS  60
LSMMKTLEKY QRCSYGALEA NQTVSETQNS YQEYLKLKAR VEVLQQSQRN LLGEDLGPLN  120
TKELEQLEHQ LEASLKHIRS TKTQFMLDEL SDLQNREQML AETNKALRRK LEETSLQGAA  180
PLQLAWEGGY GHKAHNNIQQ HNRLPPQSQG FFQPLHGNNS STLQIGYLSI FQIHSTGLRS  240
SSSPDELGKS RPKCEWIHSW VDALTALVFN KDAWNDVRAS SSRINQELLI CFLTLKRIEN  300
KINRQVTFSK RRSGLLKKAH EISVLCDAEV ALIVFSTKGK LFEYSTDSSM ERILERYERY  360
SYAERQLLGN DHGDHDQSNG NWTLEHAKLK ARVEVLQRNQ NHFMGEDLQS LSMKELQNLE  420
QQLDSALKHI RSRKNQLMYE SISVLQKKDK ALQEQNNLLT KKVKEKEKAI AGSAPQAQAQ  480
AQAQAQWEQM QKQSLDSASG DYDQDEETPP TPPLQHRAAA ADAAANSNTL LPPWMLRHLN  540
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-94	MIKC_MADS family protein