PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03364

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 626aa MW: 69396.9 Da PI: 8.7259

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03364	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.8	2.3e-41	205	281	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rh+vCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Ro05_G03364 205 CQVYGCNKDLSSSKDYHKRHRVCEAHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDNGKRSCRKRLAGHNERRRKPQV 281 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MKRQKKNEDI VFQDRSSISQ TNGIMGLYRR MRSKLKHVGS LGSKVWNHLA LLHVMESWSC 60 ISEGKGFVSD ETISHSDSLA RNRNALMGWD LKIPCNYESQ GFGELGLPEM ISKHLPRSTI 120 NTSSMGSPNL FSGEDESSSK ISSSIVESNS RDSSLFDLKL GRFADNRDVY NSKLSKGASI 180 LSSSESSTPT KRMRITGVYS QTSYCQVYGC NKDLSSSKDY HKRHRVCEAH SKTAKVIVKG 240 IEQRFCQQCS RFHLLAEFDN GKRSCRKRLA GHNERRRKPQ VDIHSGRAGR LLQSYNGNRF 300 PGTMLTAASF ICQDILPGGI LDAKNYGTSD WCRRIKVEGD TQYRPLSGVP VTNGHLHLKP 360 VLPSYDIGKQ YPPVDENGTN NLLTGRILGE NGSQYPHDMR SLNSGSHSIY QEVALGSEDF 420 NVFGTTASTV QGLSRIPDSG FALSLLSPQP QSSPSHSSGI LMARPLVMPV NHTHYNLSQV 480 SDKLFGGCSQ ASTSGVSHKY PSLGPMMITS GSDTDDFGIS DEIFQVSQFV NTKDRLSCDG 540 GTTIDLLQLS SQLQRVDDQR QSLQVKQEND ASAASESLQE TIEGTKYRSW EQIHRGSPRE 600 TMTVALEEVK KELLLAYNFN LLLSNF

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MKRQKKNEDI VFQDRSSISQ TNGIMGLYRR MRSKLKHVGS LGSKVWNHLA LLHVMESWSC  60
ISEGKGFVSD ETISHSDSLA RNRNALMGWD LKIPCNYESQ GFGELGLPEM ISKHLPRSTI  120
NTSSMGSPNL FSGEDESSSK ISSSIVESNS RDSSLFDLKL GRFADNRDVY NSKLSKGASI  180
LSSSESSTPT KRMRITGVYS QTSYCQVYGC NKDLSSSKDY HKRHRVCEAH SKTAKVIVKG  240
IEQRFCQQCS RFHLLAEFDN GKRSCRKRLA GHNERRRKPQ VDIHSGRAGR LLQSYNGNRF  300
PGTMLTAASF ICQDILPGGI LDAKNYGTSD WCRRIKVEGD TQYRPLSGVP VTNGHLHLKP  360
VLPSYDIGKQ YPPVDENGTN NLLTGRILGE NGSQYPHDMR SLNSGSHSIY QEVALGSEDF  420
NVFGTTASTV QGLSRIPDSG FALSLLSPQP QSSPSHSSGI LMARPLVMPV NHTHYNLSQV  480
SDKLFGGCSQ ASTSGVSHKY PSLGPMMITS GSDTDDFGIS DEIFQVSQFV NTKDRLSCDG  540
GTTIDLLQLS SQLQRVDDQR QSLQVKQEND ASAASESLQE TIEGTKYRSW EQIHRGSPRE  600
TMTVALEEVK KELLLAYNFN LLLSNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-49	SBP family protein