PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G03319 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 177aa MW: 20475.9 Da PI: 6.6324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.8 | 9.2e-32 | 15 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tksgyWka 85 lp+GfrF Ptdeelv++yL +k++ + ++++++i+e+d y+ +P++L +++++e+ew+fF+++d +y +g+ ++ a g+Wk Ro05_G03319 15 LPVGFRFMPTDEELVTHYLMNKASYRAVPVADAIQEIDatqFYSNHPKNLV-TFSNGEREWFFFIHEDDEYFSGSSSSHAqrrrnvrevgNGLGFWKP 111 79*************************999998888874447888*****6.788899*************977733333223334444444899*** PP NAM 86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +g+++++++++g + +k L++++g +++k+++t+W m ey+l Ro05_G03319 112 SGSENPIYNEDGDVFATKIFLTYFSGscHSNKPKRTHWKMVEYHL 156 ************************7755889999**********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MEAQKGVVAM SSDLLPVGFR FMPTDEELVT HYLMNKASYR AVPVADAIQE IDATQFYSNH 60 PKNLVTFSNG EREWFFFIHE DDEYFSGSSS SHAQRRRNVR EVGNGLGFWK PSGSENPIYN 120 EDGDVFATKI FLTYFSGSCH SNKPKRTHWK MVEYHLQIRT EWVVLGRIQR GMEYTGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 4e-19 | NAC family protein |