PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03270

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 373aa MW: 42318.7 Da PI: 8.0175

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03270	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.9	1.3e-55	23	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL+kkv ++++ + ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ ++ Ro05_G03270 23 LPPGFRFHPTDEELISHYLHKKVIDSNFGC-KAIGDVDLNKSEPWDLPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK-GKF 118 79***********************999.88***********99999************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgek++Wvmheyrle Ro05_G03270 119 LVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 149 ***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MIQEMEKFIV PAGIVKEDDQ IDLPPGFRFH PTDEELISHY LHKKVIDSNF GCKAIGDVDL 60 NKSEPWDLPY KAKMGEKEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KEIYKGKFLV 120 GMKKTLVFYR GRAPKGEKSN WVMHEYRLEG KFSVHNLPKS AKNEWVICRV FEKSAGGKKT 180 HISGLVNLGS HGTEMGSSGL PPLLDSAPYN GPKTRPASEL NYVPCFSNHD SMDAQRNQGI 240 VDYINNNPLF SVSSNPSNNN NAFTRVPFPN SHYSAQASAP VSSANFQFPG SVLMQDHLRA 300 LLENNVSFMR QSFKTERDMN ISVSQETGLT TDVNPEISSV MPNPEMGRRP FDDQDNFWIY 360 WHHSGEGAAI QYW

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MIQEMEKFIV PAGIVKEDDQ IDLPPGFRFH PTDEELISHY LHKKVIDSNF GCKAIGDVDL  60
NKSEPWDLPY KAKMGEKEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KEIYKGKFLV  120
GMKKTLVFYR GRAPKGEKSN WVMHEYRLEG KFSVHNLPKS AKNEWVICRV FEKSAGGKKT  180
HISGLVNLGS HGTEMGSSGL PPLLDSAPYN GPKTRPASEL NYVPCFSNHD SMDAQRNQGI  240
VDYINNNPLF SVSSNPSNNN NAFTRVPFPN SHYSAQASAP VSSANFQFPG SVLMQDHLRA  300
LLENNVSFMR QSFKTERDMN ISVSQETGLT TDVNPEISSV MPNPEMGRRP FDDQDNFWIY  360
WHHSGEGAAI QYW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-142	NAC family protein