PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01952

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 1526aa MW: 171434 Da PI: 8.727

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01952	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.2	6e-20	1434	1514	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev+ ie+r ++++r++ k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g+++r +++py+++++ Ro05_G01952 1434 KWKPEEVKRFIEMRGKLHSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSR-----KSWPYYEEMD 1514 7******************************************************************96.....56*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1526 aa Download sequence
MEVSRAPPTE VNETKDLKTL ISFYSSYLWN RVLDFLPSFD YNFLRKIRAA GSRRRRRRAC 60 LPLPLPCNLL DSCRPATTEA SRVLDVLHDI LEYTFSSLHN IQKNLQFWES RAEGSKAQKI 120 KFMVLERGPH AFVDGTIQLI RGYDGEGSSI QNMYLSASAH ISERVAILTS LRSSLATFLA 180 QFYMEIERFG EELVRDPENS LPSLLERINE LFFKLEASIG HLHAMRQGDS SVEGSYSFPL 240 VFEKLPEINQ DGSQWTDCEI RDAINLISQN LEKLESHVCF IVNKHRKPRR ATRYWIRYTC 300 GAVGLSFCSM WLIRHSRLSG SHDIDNWVRE AKDSTVSFLH DHVEQPLLSI RDELFETFRK 360 RHKGMMELEE VQLTANSLHR MLLAFTEQTE GKKLPKNASD QEMLEIVMAR YEKELEHPIN 420 NLLKGELARA LLIQVQKLKL DTETAMLELN QILRANEINF AILAALPAFF LSLILLMLVR 480 AWFKRDTKAE GRGRAARIQR RLLVVEVEKR IMQYQNFIDQ GMGKEALDMF GLLLYSLDRL 540 CHAVKGHAKA TGEWQWLCQD IIDLAKPSLQ TASKLTVTSR LERVYDCLLP ALQRHLQKSY 600 STLPPFPAPP DFRGFASPFR PPETSKLMQL GVLGGLSLYH SIYSAPPGLP TQMAAVGALS 660 PFPYSLLWRP KSSNRSVSCA LGSSNPTTTG TRGSNVKRSG RVEGPRKSME DSVQRKMEQF 720 YEGKDGPPLR ILPIGGLGEI GMNCMLVGNY DRYILIDAGI MFPDFDELGV QKIIPDTTFI 780 RKWKHKIEAI VITHGHEDHI GALPWVIPAL DSNTPIFASS FTMELIRKRL KENGIFVPSR 840 LKMFRTKRKF LAGPFEIEPI RVTHSIPDCC GLVLRCADGT ILHTGDWKID ESPLDGQGFD 900 REGLEELSKE GVTLMMSDST NVLSPGRTTS ESSVADALLR HISAAQGRVI TTQFASNIHR 960 LGSVKAAADA TGRKLVFVGM SLRTYLDAAW RDGKAPIDPS TLVKVEDIDS YAPKDLLIVT 1020 TGSQAEPRAA LNLASFGSSH SVKLTKEDII LYSAKVIPGN ESRVMKMLNR ISDMGSTIVM 1080 GKNEGLHTSG HGYRGELEEV LRIVKPQHFL PIHGELLFLK EHELLGRSTG IHHTTVIKNG 1140 EMLGVSHLRN RRVLSNGFTL LGKENLQLKY SDGDKAFGTS SELCVDERLK IALDGIIVVS 1200 MEILRPQNVN GLAESSIKGK IRITTRCLWL DKGKLYDALY KAAHAALSSC PINCPLPHME 1260 RTVSEVLRKL VRKYSGKRPE VIAIAMENPT GVLADEVGAR LSGKSHVGSE RSALRKVIDG 1320 NSNKSRSTRT QADEAKDITH LQSSTSQQDF EDDGIEVKAP LPVEVSASSN VNPEKLASDT 1380 EESDDFWNAM VRLSAGDKLV EEKNGLVLQE EHLKKDDPES SETPNPPKPV KRNKWKPEEV 1440 KRFIEMRGKL HSRFQVVKGR MALWEEISRN LLADGINRSP GQCKSLWASL VQKYEESKSG 1500 KRSRKSWPYY EEMDGAMSDS EAMATK

Sequence ? help Back to Top

Protein Sequence Length: 1526 aa Download sequence

MEVSRAPPTE VNETKDLKTL ISFYSSYLWN RVLDFLPSFD YNFLRKIRAA GSRRRRRRAC  60
LPLPLPCNLL DSCRPATTEA SRVLDVLHDI LEYTFSSLHN IQKNLQFWES RAEGSKAQKI  120
KFMVLERGPH AFVDGTIQLI RGYDGEGSSI QNMYLSASAH ISERVAILTS LRSSLATFLA  180
QFYMEIERFG EELVRDPENS LPSLLERINE LFFKLEASIG HLHAMRQGDS SVEGSYSFPL  240
VFEKLPEINQ DGSQWTDCEI RDAINLISQN LEKLESHVCF IVNKHRKPRR ATRYWIRYTC  300
GAVGLSFCSM WLIRHSRLSG SHDIDNWVRE AKDSTVSFLH DHVEQPLLSI RDELFETFRK  360
RHKGMMELEE VQLTANSLHR MLLAFTEQTE GKKLPKNASD QEMLEIVMAR YEKELEHPIN  420
NLLKGELARA LLIQVQKLKL DTETAMLELN QILRANEINF AILAALPAFF LSLILLMLVR  480
AWFKRDTKAE GRGRAARIQR RLLVVEVEKR IMQYQNFIDQ GMGKEALDMF GLLLYSLDRL  540
CHAVKGHAKA TGEWQWLCQD IIDLAKPSLQ TASKLTVTSR LERVYDCLLP ALQRHLQKSY  600
STLPPFPAPP DFRGFASPFR PPETSKLMQL GVLGGLSLYH SIYSAPPGLP TQMAAVGALS  660
PFPYSLLWRP KSSNRSVSCA LGSSNPTTTG TRGSNVKRSG RVEGPRKSME DSVQRKMEQF  720
YEGKDGPPLR ILPIGGLGEI GMNCMLVGNY DRYILIDAGI MFPDFDELGV QKIIPDTTFI  780
RKWKHKIEAI VITHGHEDHI GALPWVIPAL DSNTPIFASS FTMELIRKRL KENGIFVPSR  840
LKMFRTKRKF LAGPFEIEPI RVTHSIPDCC GLVLRCADGT ILHTGDWKID ESPLDGQGFD  900
REGLEELSKE GVTLMMSDST NVLSPGRTTS ESSVADALLR HISAAQGRVI TTQFASNIHR  960
LGSVKAAADA TGRKLVFVGM SLRTYLDAAW RDGKAPIDPS TLVKVEDIDS YAPKDLLIVT  1020
TGSQAEPRAA LNLASFGSSH SVKLTKEDII LYSAKVIPGN ESRVMKMLNR ISDMGSTIVM  1080
GKNEGLHTSG HGYRGELEEV LRIVKPQHFL PIHGELLFLK EHELLGRSTG IHHTTVIKNG  1140
EMLGVSHLRN RRVLSNGFTL LGKENLQLKY SDGDKAFGTS SELCVDERLK IALDGIIVVS  1200
MEILRPQNVN GLAESSIKGK IRITTRCLWL DKGKLYDALY KAAHAALSSC PINCPLPHME  1260
RTVSEVLRKL VRKYSGKRPE VIAIAMENPT GVLADEVGAR LSGKSHVGSE RSALRKVIDG  1320
NSNKSRSTRT QADEAKDITH LQSSTSQQDF EDDGIEVKAP LPVEVSASSN VNPEKLASDT  1380
EESDDFWNAM VRLSAGDKLV EEKNGLVLQE EHLKKDDPES SETPNPPKPV KRNKWKPEEV  1440
KRFIEMRGKL HSRFQVVKGR MALWEEISRN LLADGINRSP GQCKSLWASL VQKYEESKSG  1500
KRSRKSWPYY EEMDGAMSDS EAMATK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	58	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein