PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01909

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 205aa MW: 23180.1 Da PI: 10.4696

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01909	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.5	6.5e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien r+vtfskRrng+lKKA+ELS+LCda+va+i fs++gk+y ++s Ro05_G01909 9 KRIENPASRKVTFSKRRNGLLKKAFELSILCDAQVALIAFSPSGKVYQFAS 59 79***********************************************86 PP
2	K-box	52.2	2.6e-18	87	161	11	85
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +a++e +++e + L++ i+nL+ +++l G +L+ L ++eL+qLe+qL++++++i sk +++ e+ + l++k k Ro05_G01909 87 TATMEFWRNETEELRRSIQNLEMRLKNLAGAELSMLGMQELKQLERQLKTGIERIHSKMRRVISENHSSLKRKVK 161 67899*******************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MGRGKVELKR IENPASRKVT FSKRRNGLLK KAFELSILCD AQVALIAFSP SGKVYQFASH 60 DINRTIAMYR REVGLPQSSI PACCTRTATM EFWRNETEEL RRSIQNLEMR LKNLAGAELS 120 MLGMQELKQL ERQLKTGIER IHSKMRRVIS ENHSSLKRKV KLDELDQYGD ASCMITLGAS 180 TAGFFVFVRI DIAAVMPTVG LEKAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	6e-44	MIKC_MADS family protein