PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01905

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 419aa MW: 46084.9 Da PI: 8.2717

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01905	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.7e-41	103	179	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ Ro05_G01905 103 CLVDGCKSDLSTCRDYHRRHKVCEDHSKTPMVTINGQKQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 179 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MDWNLKAPPS WDLSELEQEP FSNLDTVAGS IGFGDHHHQQ QQHRAIKGDF SVDLKLGQLG 60 DSGTSELVDM LKEHGGPKPT SSSPSGASKR SRAAYNGSQT VSCLVDGCKS DLSTCRDYHR 120 RHKVCEDHSK TPMVTINGQK QRFCQQCSRF HSLGEFDEGK RSCRKRLDGH NRRRRKPQPE 180 PMSRSGSFLS NYQGAQLLPF SSSLVYPSTT VVNPTWAGVV KAESDPGLHN QHLQHQSMFL 240 GSPTSSSYNK GSGNKQQFTL FQSSCSNQTS SHPASVCQPL LNTISMSETA SASSAKSKTF 300 CDRLTPIRIH PDSDCALSLL SSPQTQQQTS ELGLRHMGQH PPNSISLMHH HHHRHRIGLH 360 GNNNSNSIEP MDSVLVSHGS SDHANNVHQS PGMFHMAGAD GSTQGNHHHG PQTSTFHWE

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MDWNLKAPPS WDLSELEQEP FSNLDTVAGS IGFGDHHHQQ QQHRAIKGDF SVDLKLGQLG  60
DSGTSELVDM LKEHGGPKPT SSSPSGASKR SRAAYNGSQT VSCLVDGCKS DLSTCRDYHR  120
RHKVCEDHSK TPMVTINGQK QRFCQQCSRF HSLGEFDEGK RSCRKRLDGH NRRRRKPQPE  180
PMSRSGSFLS NYQGAQLLPF SSSLVYPSTT VVNPTWAGVV KAESDPGLHN QHLQHQSMFL  240
GSPTSSSYNK GSGNKQQFTL FQSSCSNQTS SHPASVCQPL LNTISMSETA SASSAKSKTF  300
CDRLTPIRIH PDSDCALSLL SSPQTQQQTS ELGLRHMGQH PPNSISLMHH HHHRHRIGLH  360
GNNNSNSIEP MDSVLVSHGS SDHANNVHQS PGMFHMAGAD GSTQGNHHHG PQTSTFHWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	177	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-70	SBP family protein