PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01846

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 506aa MW: 56091.8 Da PI: 5.6932

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01846	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.9	4.7e-22	39	135	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt++e+l+Lie+++ +e+ ++ +k +p+W+ vs+++r+rg++r+p+qC+++w+nl ++kki+++e++ + e++s +++ ++l+ Ro05_G01846 39 RWTRHETLVLIEGKKVIENGIQYQKgrrsiaalgsePVEPKWDLVSSFCRQRGVSRGPVQCRKRWSNLLVDFKKIRNWESQIKGEAESFWVMRNDLR 135 8****************9997655566666766689******************************************999999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MALDSTKHKD GGSPPDQVEK LQVPSGYSEE RPKTIRHPRW TRHETLVLIE GKKVIENGIQ 60 YQKGRRSIAA LGSEPVEPKW DLVSSFCRQR GVSRGPVQCR KRWSNLLVDF KKIRNWESQI 120 KGEAESFWVM RNDLRRDKKL PGFFDREVYN VLDRKAVTAI AAFPLAFMCP VPLNSRRMDD 180 GAEEAAAEEE EEEEEEEEPE KCFNNSRNDS TENGLFSDFE ESGQEETAIN SKREQKGTGS 240 PTKTFTTPVS TPGTVQKKRG LGSDTWRECV SQGKQKQRRL DGSEDNCSDQ LIRVLEKNSN 300 MLNAQLEAHN KNCQLDRDQS KEQSDNLLAA IKNVTDALVQ SSEVSDSRPV KQGGQSSHQP 360 CSVVCESPAI QFTLQIETTS SSKLVELTAN SHLLLGLGDH GSGNVGGGYK GTFLCERDSE 420 TAGAATSVTD SNPLKRTFIG QHLHHILDGF RMAEPDIPLD SVHVVRFAVN LLPPLEAGLV 480 EVVLHNLLVA AADLLGLELP PALRVG

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MALDSTKHKD GGSPPDQVEK LQVPSGYSEE RPKTIRHPRW TRHETLVLIE GKKVIENGIQ  60
YQKGRRSIAA LGSEPVEPKW DLVSSFCRQR GVSRGPVQCR KRWSNLLVDF KKIRNWESQI  120
KGEAESFWVM RNDLRRDKKL PGFFDREVYN VLDRKAVTAI AAFPLAFMCP VPLNSRRMDD  180
GAEEAAAEEE EEEEEEEEPE KCFNNSRNDS TENGLFSDFE ESGQEETAIN SKREQKGTGS  240
PTKTFTTPVS TPGTVQKKRG LGSDTWRECV SQGKQKQRRL DGSEDNCSDQ LIRVLEKNSN  300
MLNAQLEAHN KNCQLDRDQS KEQSDNLLAA IKNVTDALVQ SSEVSDSRPV KQGGQSSHQP  360
CSVVCESPAI QFTLQIETTS SSKLVELTAN SHLLLGLGDH GSGNVGGGYK GTFLCERDSE  420
TAGAATSVTD SNPLKRTFIG QHLHHILDGF RMAEPDIPLD SVHVVRFAVN LLPPLEAGLV  480
EVVLHNLLVA AADLLGLELP PALRVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-63	Trihelix family protein