PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01834
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 272aa    MW: 30144 Da    PI: 6.5103
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01834genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-1956105255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f +ae Aa a+++a+++++g
  Ro05_G01834  56 HYRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFESAEAAALAYDEAALRFKG 105
                  69*******.**********94....45***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MVSALTQVIA DTHDQNPLQV EHQLHENPVI TSALNHVEQS QPADLQDQGN MNRQQHYRGV  60
RRRPWGKWAA EIRDPKKAAR VWLGTFESAE AAALAYDEAA LRFKGSKAKL NFPERVQGIS  120
PCTTTTTTTT TTTTTGSYLI ITSSSDHDQQ VNSNPPPPPP AAPISQPTTY NIPNFDYHDA  180
QYLGSNRNYI DFGVSSSQNY GSQTNISVPT TSSTSSASSI PSNHEHVVLQ QQEDQQLLMY  240
PMMPFGSSSS SSDPPTKYKR DSSESSDHYF RR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.19e-34ERF family protein