PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G01782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 1084aa MW: 121087 Da PI: 5.5195 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.2e-53 | 359 | 493 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLpk ++k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ Ro05_G01782 359 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPEIDVCKWEPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRq 455 699************************999.99***************5458899999**************************************98 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ lvg+kktLvfy+grapkge+t+W+mheyr Ro05_G01782 456 fksvsnNTGLVGMKKTLVFYRGRAPKGERTSWIMHEYR 493 8777666666***************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1084 aa Download sequence |
MSNNNDCELP DLEKQQCHSG AEAVSSIPDS RLEDTVPAVP LLNVVVSEPP TSTSNLSKEV 60 PSPQKGHHSR TSSSHEQCRV CQQDKDEALI DLGCHCRGGL AKAHRSCIDT WFRTKGSNKC 120 EICQGVAANV SSPESQPTTN YWVWRIETTF RSQNQDRGCM SPLWVAFSIL IGGLLLDVLI 180 SATLGISAVP VNIIIGVIVV LGLGTILRLA LSFCHEWSSR RVAQRVRTNV QNVPVGYHTV 240 YSTVITRTRV HTLATWSELG LRRRDRLQRI HVESTASSQS KAGHRLQSIK VKASSSLIEE 300 ETAHVPSFQE EKERREEKTQ LPNCHSRPNQ AEAGVRAEEE EEDQRPLRAQ MAVLSMESLP 360 LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPEIDVCKWE PWDLPKLSMI KSDDQEWFFF 420 CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSVS NNTGLVGMKK TLVFYRGRAP 480 KGERTSWIMH EYRPTQKELD GTAPGQCAFV LCRLFHKPEE KAEVLKYDEV EQTGLSPTNS 540 PDEASSDIVQ ETATPDMKGG KQSEGISRWL NDNSDHMTPD ALTVPPVDSY MASDVEDHGP 600 EETTIWGHHH LPGENLGFYE PTGDQIDCKV FSPSHSQFNA ELDYVGSPFP SDFGNYNNGL 660 HFQDGTCEQD VSLTELLDGV CNNHYESSCE ESTSQKNLVV DSETYLSDHA FMLQAMPPEN 720 SWLNGSFGDT DAKVAQHNLE MRAPGLSNEQ FDPEDLLQKT SFGSHQAEAS ALLHDQKPRT 780 GNMGYPSNSF ADSAVNSVYH MSNNLDGSTS WQNVDNHSID QVGGPSIKIR SRLSQERPNL 840 NVMNQGSAQR RIRLLLDNHT RHSNHNKEED EVQSTITEAR DAVPESLTSD EEKEVHAMFD 900 KEEEVTSRNY SINNERDLVG RTAITRKVRQ SQEPSDSDKS ITQGMAPRRI RLAMNSSPVS 960 VADGNARDTS HGQEDEVQSS IIEASEASEK SPNLNEQDVE CHPWKLEEPS TTVIDESKKT 1020 TEEAVTTKFR SRTGSDNSLQ SNHMGMSVPS KTPSKHYGPT SALIISVGIP LLLTTTWSVA 1080 ECDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-130 | NAC family protein |