PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01751

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 396aa MW: 45260.4 Da PI: 6.416

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.3	4.3e-51	17	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yL+kkv+ ++++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s Ro05_G01751 17 VPPGFRFHPTEEELLHYYLRKKVSYERIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS- 112 69**************************.9***********964444222455**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +gl+ktLvfykgrap+g+k+dW+mheyrl Ro05_G01751 113 GIRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 145 9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MSAEDHMNLS INGQSQVPPG FRFHPTEEEL LHYYLRKKVS YERIDLDVIR EVDLNKLEPW 60 DIQEKCKIGS TPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKII YSGIRRIGLR 120 KTLVFYKGRA PHGQKSDWIM HEYRLDESSS SSSLDTTVSS LIGESMSEDG WVVCRVFKKK 180 NYQKALESPK ASYPMDSSNN QMLPGGSRND GVVDQILLYM GRTSCKLENH DSLHDRFMHL 240 PRLESQTSLP SLAVHFDHDR SFKACYHDQT IDDMLIETDH QQPSPTTNQP NDPVDHDDPK 300 TRIVNDWATI HQLVASQLNG HEDTSKHLSC FGDPNMAFCS SPPSNDEDLQ LSYPYLRPGR 360 ISQNQPEVYN SENDLWSFTK SSPSPSSSDP LCHLSV

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MSAEDHMNLS INGQSQVPPG FRFHPTEEEL LHYYLRKKVS YERIDLDVIR EVDLNKLEPW  60
DIQEKCKIGS TPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKII YSGIRRIGLR  120
KTLVFYKGRA PHGQKSDWIM HEYRLDESSS SSSLDTTVSS LIGESMSEDG WVVCRVFKKK  180
NYQKALESPK ASYPMDSSNN QMLPGGSRND GVVDQILLYM GRTSCKLENH DSLHDRFMHL  240
PRLESQTSLP SLAVHFDHDR SFKACYHDQT IDDMLIETDH QQPSPTTNQP NDPVDHDDPK  300
TRIVNDWATI HQLVASQLNG HEDTSKHLSC FGDPNMAFCS SPPSNDEDLQ LSYPYLRPGR  360
ISQNQPEVYN SENDLWSFTK SSPSPSSSDP LCHLSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-104	NAC family protein