PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01749

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 481aa MW: 53286.4 Da PI: 8.1768

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01749	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	61.8	1e-19	186	225	1	40
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 d+ep+rC+RtDGKkWRCsr+ ++k+CErH+h+ rsr+ Ro05_G01749 186 DPEPWRCKRTDGKKWRCSRDIATDQKYCERHCHKRRSRKH 225 79*********************************88764 PP
2	QLQ	46.4	1.2e-16	124	159	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ ++L++Q +yKy++a +PvP++Ll+ i++ Ro05_G01749 124 PFTPAQREELETQTVIYKYIMACLPVPQQLLLSITN 159 8*******************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MMGKSRRNGF VETAERESCD IGLGLMMETH QSFPGKKMNQ MVMVMPHHEP QFLSGGFDGE 60 TGSSGPLFYN TSNNNHPGTS DICNAVCSDF GSVVPKTLQQ PYYSDSLSFS SSVGGMVNVN 120 VRIPFTPAQR EELETQTVIY KYIMACLPVP QQLLLSITNN PSNGVKESSG TRGVKGMLEG 180 FSRNLDPEPW RCKRTDGKKW RCSRDIATDQ KYCERHCHKR RSRKHVESIP NFINNKNANM 240 LKSSTFKNNN NSINHQTPFS STMVTPAAAA SHGRPRALDW FMNGESASVA GSNQEWEHLM 300 PFKLGLNSHT NKRDTNVDLS TQQNDSSLKL YRGDSQGLHS QRSHDHLGVA LNSNQAQQTR 360 HFIDAWSTER DGIDDLGKRK RYSASLNQKL PFSSLSLSMS GENDEANEEG GYTQMGVGVL 420 GSERQNVTQW MSPLSWMSSP PGGPLAEALC LGIASSTRAT SSSHGFRSSN PDVRQEFDLI 480 N

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MMGKSRRNGF VETAERESCD IGLGLMMETH QSFPGKKMNQ MVMVMPHHEP QFLSGGFDGE  60
TGSSGPLFYN TSNNNHPGTS DICNAVCSDF GSVVPKTLQQ PYYSDSLSFS SSVGGMVNVN  120
VRIPFTPAQR EELETQTVIY KYIMACLPVP QQLLLSITNN PSNGVKESSG TRGVKGMLEG  180
FSRNLDPEPW RCKRTDGKKW RCSRDIATDQ KYCERHCHKR RSRKHVESIP NFINNKNANM  240
LKSSTFKNNN NSINHQTPFS STMVTPAAAA SHGRPRALDW FMNGESASVA GSNQEWEHLM  300
PFKLGLNSHT NKRDTNVDLS TQQNDSSLKL YRGDSQGLHS QRSHDHLGVA LNSNQAQQTR  360
HFIDAWSTER DGIDDLGKRK RYSASLNQKL PFSSLSLSMS GENDEANEEG GYTQMGVGVL  420
GSERQNVTQW MSPLSWMSSP PGGPLAEALC LGIASSTRAT SSSHGFRSSN PDVRQEFDLI  480
N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	3e-30	GRF family protein