PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01695

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Nin-like

Protein Properties

Length: 958aa MW: 105687 Da PI: 5.419

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01695	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.3e-29	581	631	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Ro05_G01695 581 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 631 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence
MSEPEEDRTR AISPKSKNLD PSSLMDFDLD VCWPLDQIQF LSNPTSPFLF SPADHPCSPL 60 WAFSDVSDDK LAGGGHVAQA LPDRPQFVPA TNLVKEKPRE NEDNRMLPSP FLGLEPNPDG 120 YCLIKERITQ ALRYLKESSD QHVLAQVWAP VKNGSQYVLT TSGQPFVLDP HDGLHQYRMV 180 SLMYMFSVDG ENDGVLGLPG RVFQQKLPEW TPNVQYYSIK EYPRLDHAQH YNVQGTLALP 240 VFEPSGRSCI GVIELIMTSQ KINYAPEVDK ICKALKAVSL KSSEILDYTS TQIQIRNEGR 300 QNALTEILGI LTVVCEAHKL PLAQTWVPCM HRNVLAYGGG LKKSCTSFDG SCMEQVCMST 360 TDVAVYIVDA HMWGFREACV EHHLQKGQGV AGRAFLSRNA CFCRDISQFR KTEYPLVHYA 420 RMFGLTSSFA ICLQSTHTGD DDYILEFFLP PSITDSCEQQ TLLGSLLAIV KDHCQTLKVA 480 SGIVLAEEGI VEIVQASINE GLDSRLECIR IPRSLETPSG PSLPNREEMV HLESAKPQLM 540 VDIDAINDER NAVLMGGKNN ISVPENKDIK KTSERKRGKT EKSISLEVLQ QYFAGSLKDA 600 AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLSKLKL VIESVQGGEG AFGLNPLTTS 660 PLPGAVGSIS RPSTNSKPYE GHGEKKDSPT SSTPGREGQA GIEDQLLDNG KGSNSSKTGS 720 GSREASTGTP TSHGSCQGSP ANGSAMVKDH FASSIHERFV EVDRSPESAF RPPEELNLSV 780 PFSIPDALLM TEPEEPCRGM LIGDAGSSKD LKNLCPFADT TVDEQVPEVF WTNPPCPDSA 840 PKQCMPMVAY TMPQIVSKQE MRSVTVKATY KDDIIRFRIS MSSCIVELKE EVAKRLKLEV 900 GTFDMKYMDD DLEWVLIACD ADLQECMEIC RSSGSNMIRL SVHDILPNLG SSCESTDE

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence

MSEPEEDRTR AISPKSKNLD PSSLMDFDLD VCWPLDQIQF LSNPTSPFLF SPADHPCSPL  60
WAFSDVSDDK LAGGGHVAQA LPDRPQFVPA TNLVKEKPRE NEDNRMLPSP FLGLEPNPDG  120
YCLIKERITQ ALRYLKESSD QHVLAQVWAP VKNGSQYVLT TSGQPFVLDP HDGLHQYRMV  180
SLMYMFSVDG ENDGVLGLPG RVFQQKLPEW TPNVQYYSIK EYPRLDHAQH YNVQGTLALP  240
VFEPSGRSCI GVIELIMTSQ KINYAPEVDK ICKALKAVSL KSSEILDYTS TQIQIRNEGR  300
QNALTEILGI LTVVCEAHKL PLAQTWVPCM HRNVLAYGGG LKKSCTSFDG SCMEQVCMST  360
TDVAVYIVDA HMWGFREACV EHHLQKGQGV AGRAFLSRNA CFCRDISQFR KTEYPLVHYA  420
RMFGLTSSFA ICLQSTHTGD DDYILEFFLP PSITDSCEQQ TLLGSLLAIV KDHCQTLKVA  480
SGIVLAEEGI VEIVQASINE GLDSRLECIR IPRSLETPSG PSLPNREEMV HLESAKPQLM  540
VDIDAINDER NAVLMGGKNN ISVPENKDIK KTSERKRGKT EKSISLEVLQ QYFAGSLKDA  600
AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLSKLKL VIESVQGGEG AFGLNPLTTS  660
PLPGAVGSIS RPSTNSKPYE GHGEKKDSPT SSTPGREGQA GIEDQLLDNG KGSNSSKTGS  720
GSREASTGTP TSHGSCQGSP ANGSAMVKDH FASSIHERFV EVDRSPESAF RPPEELNLSV  780
PFSIPDALLM TEPEEPCRGM LIGDAGSSKD LKNLCPFADT TVDEQVPEVF WTNPPCPDSA  840
PKQCMPMVAY TMPQIVSKQE MRSVTVKATY KDDIIRFRIS MSSCIVELKE EVAKRLKLEV  900
GTFDMKYMDD DLEWVLIACD ADLQECMEIC RSSGSNMIRL SVHDILPNLG SSCESTDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein