PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G37250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 170aa MW: 19142.5 Da PI: 4.5626 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.7e-08 | 86 | 110 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++r+G CkyG++ +F+H+ Ro04_G37250 86 GERVCLYYMRNGSCKYGSNYRFNHP 110 7899***************999998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MWQDWAKDEA AMGSGPETLS TVEKLYEQGV FDYLVFYKSQ QCTFSTLDEY VDLFLTRIDG 60 LRRRLSCPIE GENALDYSLL RETFQGERVC LYYMRNGSCK YGSNYRFNHP DPTAAGGSNP 120 PFGFDNGGPA SLQWWITVTS WSAPKSLSVT PLYVPMMMPP SQGVPSQNTA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 7e-19 | C3H family protein |