PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G36927

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GATA

Protein Properties

Length: 1167aa MW: 130147 Da PI: 8.9477

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G36927	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.6	1.2e-16	157	190	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg t+Tp+WR+gp g +tLCnaCG++y++ + Ro04_G36927 157 CTHCGITQTPQWRHGPLGRRTLCNACGVRYKSGR 190 *******************************987 PP
2	GATA	31.4	2.7e-10	601	629	1	29
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGly 29 C+nCg+ ++p W +gp g+ktLC +CGl Ro04_G36927 601 CQNCGAEQSPRWWEGPLGPKTLCLSCGLA 629 ***************************95 PP
3	GATA	24.8	3.1e-08	987	1015	1	30
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30 C +Cg ++T WR gp g++tLCnaCG +y Ro04_G36927 987 CLHCG-KQTQRWRMGPLGPTTLCNACGNRY 1015 88998.58*******************998 PP
4	GATA	51	2e-16	1090	1121	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++Cg+ TplWR gp g+ktLCnaCG+++ k Ro04_G36927 1090 CQHCGAEVTPLWRAGPLGSKTLCNACGIRWYK 1121 ******************************66 PP

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence
MLSLDPDDFL ADVAEDRDYP TLPFPATEKL AEEEELEWLS NKDAFPAVET CMLSEEPPTP 60 IANAQQQNHR VSVSVSVVKA GIGKTLLPPM PSRKSKKDGA KVKNKRVCTY CGFAQTPPLP 120 EEPSAHHILC NACGYSYKPG QLCPEDSAKV ERIKRECTHC GITQTPQWRH GPLGRRTLCN 180 ACGVRYKSGR LCPEYRPANS PTFSNKLHSN AHRKVMEIRK QKYGTVSKRV DKRVATSALT 240 KSKKYFFPAV TTVNILEQPS RSVIAEEQSP VSVLENSSNS STTFMSFSGT LKPPHQPPIK 300 FLRQQLLFCN QPNNHNREDT TKVEIERNST ILVSSCGTLE TPYKAPSEVL GQQQLVSYQP 360 NNKRKKIDTA EVEIEGNSTT LMSSCGTLEP PYQAPSKFLN QQRLFYNQPN KKRNKKNTAK 420 VEMAVLPVDK WIVVMGPRIN QKGKERMVLF ISDGFDSTTT LMKSKKDSFP AVEILNILEQ 480 SSGIVIAEQQ TPVLVLENST NRSTTLISSC GTIEPAHQTS RKFMGQQQLF CNQANNKPNK 540 KDTANVEIEG NSPAAMRSCG TLESPHQAPS EFPGQQQLFC NQPNNKSNKK DTGKVGIEGK 600 CQNCGAEQSP RWWEGPLGPK TLCLSCGLAK YTARRQRSMS LATNKKCNKK DTAKVEMAVK 660 PVDKCFHLMD SRDWVNGLIT NSTTTLMKLK KDPFPAVETL NISEQPSVIV IAEQQSPVFV 720 LENSRNSSMT LMSSAGTVDP PQQAPSEFLG QQQQFCDQAN NKPKENDTAT VEIEVNSTTL 780 MSSSGTLEPP HQAPNEFLEQ QQPFCKQANN KPNKKDTARV ESEGNSTTLM SSCRTPKPPH 840 QAQSEFLVQQ QLFCNQANNE TNKENTAEVE IKGKCQNCGR AKCTARQQRC IAVEVGKLCC 900 PLPATGEFSN LTRTFPALEE FFLSQKPSDI AIAENQKPFS VLENSTNNST TLISSCGIKI 960 PHRTRTKGLR RRRNTIPGQQ VGVERKCLHC GKQTQRWRMG PLGPTTLCNA CGNRYEPLWG 1020 RSGVTVDIGK KCQHCGSEEI TQWLSCPLGP NTLCNACYHW FKYGRRQFCN QTNNNPDKKA 1080 SAEVEIRRKC QHCGAEVTPL WRAGPLGSKT LCNACGIRWY KFGDLCREYR PASSPTFSRE 1140 LHSNFYRKVT GMRKQDIEVE MVVEPTM

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence

MLSLDPDDFL ADVAEDRDYP TLPFPATEKL AEEEELEWLS NKDAFPAVET CMLSEEPPTP  60
IANAQQQNHR VSVSVSVVKA GIGKTLLPPM PSRKSKKDGA KVKNKRVCTY CGFAQTPPLP  120
EEPSAHHILC NACGYSYKPG QLCPEDSAKV ERIKRECTHC GITQTPQWRH GPLGRRTLCN  180
ACGVRYKSGR LCPEYRPANS PTFSNKLHSN AHRKVMEIRK QKYGTVSKRV DKRVATSALT  240
KSKKYFFPAV TTVNILEQPS RSVIAEEQSP VSVLENSSNS STTFMSFSGT LKPPHQPPIK  300
FLRQQLLFCN QPNNHNREDT TKVEIERNST ILVSSCGTLE TPYKAPSEVL GQQQLVSYQP  360
NNKRKKIDTA EVEIEGNSTT LMSSCGTLEP PYQAPSKFLN QQRLFYNQPN KKRNKKNTAK  420
VEMAVLPVDK WIVVMGPRIN QKGKERMVLF ISDGFDSTTT LMKSKKDSFP AVEILNILEQ  480
SSGIVIAEQQ TPVLVLENST NRSTTLISSC GTIEPAHQTS RKFMGQQQLF CNQANNKPNK  540
KDTANVEIEG NSPAAMRSCG TLESPHQAPS EFPGQQQLFC NQPNNKSNKK DTGKVGIEGK  600
CQNCGAEQSP RWWEGPLGPK TLCLSCGLAK YTARRQRSMS LATNKKCNKK DTAKVEMAVK  660
PVDKCFHLMD SRDWVNGLIT NSTTTLMKLK KDPFPAVETL NISEQPSVIV IAEQQSPVFV  720
LENSRNSSMT LMSSAGTVDP PQQAPSEFLG QQQQFCDQAN NKPKENDTAT VEIEVNSTTL  780
MSSSGTLEPP HQAPNEFLEQ QQPFCKQANN KPNKKDTARV ESEGNSTTLM SSCRTPKPPH  840
QAQSEFLVQQ QLFCNQANNE TNKENTAEVE IKGKCQNCGR AKCTARQQRC IAVEVGKLCC  900
PLPATGEFSN LTRTFPALEE FFLSQKPSDI AIAENQKPFS VLENSTNNST TLISSCGIKI  960
PHRTRTKGLR RRRNTIPGQQ VGVERKCLHC GKQTQRWRMG PLGPTTLCNA CGNRYEPLWG  1020
RSGVTVDIGK KCQHCGSEEI TQWLSCPLGP NTLCNACYHW FKYGRRQFCN QTNNNPDKKA  1080
SAEVEIRRKC QHCGAEVTPL WRAGPLGSKT LCNACGIRWY KFGDLCREYR PASSPTFSRE  1140
LHSNFYRKVT GMRKQDIEVE MVVEPTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34680.2	2e-32	GATA family protein