PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G36357 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 104aa MW: 12247.6 Da PI: 10.8328 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.9 | 6.5e-24 | 11 | 58 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien rqvt+skRr g+lKKAeELSvLCd e av+ifs tgkl e Ro04_G36357 11 KKIENLPARQVTYSKRRRGLLKKAEELSVLCDCEYAVVIFSATGKLCE 58 689*******************************************88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence |
MKTTSKKITI KKIENLPARQ VTYSKRRRGL LKKAEELSVL CDCEYAVVIF SATGKLCESS 60 SSRYLSGHLF LLLLLVRIQK YNRDMCQYIR RRRPLWKYSI SSIR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 2e-20 | MIKC_MADS family protein |