PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36209
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 281aa    MW: 31127.2 Da    PI: 5.1229
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36209genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.11e-222976148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 k+i+n   rqvt+skRr g+lKKA ELSvLCd e aviifs tgkl e
  Ro04_G36209 29 KKIDNLPARQVTYSKRRRGLLKKAGELSVLCDCEFAVIIFSATGKLCE 76
                 689999****************************************87 PP
2K-box33.32.1e-121482231691
        K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                  + q+++ +L ke+    r++R++ GedLe L++ eL +Le+++e +++++  +K+  ++++i  l  k  + ++en
  Ro04_G36209 148 EHQHDHIRLSKELADKSRKIRQMNGEDLEGLNMDELLKLEEDIEGGINRVLRTKEVKIISEILALEVKIGMSSNEN 223
                  56788889999999999***************************************99999999998888888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MVGGVFLVDL GAREQLAMTK TTSKKITIKK IDNLPARQVT YSKRRRGLLK KAGELSVLCD  60
CEFAVIIFSA TGKLCESSSS RLKDGQFHVE TEINDQHLAE SVDKNVNAFL LAYLVYDQFE  120
HVGSTKDVIA RYESHIANVE KLDQPSLEHQ HDHIRLSKEL ADKSRKIRQM NGEDLEGLNM  180
DELLKLEEDI EGGINRVLRT KEVKIISEIL ALEVKIGMSS NENGNRDGVS YESYVSTADE  240
GLSSESTINA SSCFSTDSSL VDDSAADTLS LKLGQVMHIT T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-45MIKC_MADS family protein