PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G36127
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 489aa    MW: 53381 Da    PI: 6.5634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G36127genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-06120142123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+CgksF++ ++  +H  ++
  Ro04_G36127 120 FECPICGKSFRSEEEVSVHVDSC 142
                  89*****************8776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MSDMKDKVKG FIKNPFSSSS SGKFKGQGRV LGSSSSSGCP ANSPILSRAS QTPQSKPNPN  60
PISNSNSSVL PQKTKNLDQN RPELPTNPKP NRKPQEGFDP FDALITPGKR SQNGYSLNVF  120
ECPICGKSFR SEEEVSVHVD SCVNNKSAEG VSGSVETVES SRSELEACIG TFASGNPGSG  180
SVEVLLRLLR NIVREPENVK FRKIRMSNPK IREAIGEVVG GIELLEFVGF ELKQEEGEMW  240
AVMEVPSAEQ IGVMKKGIAL LEPPKVQEPQ KTESLPSTGS LNEDEQIEPK KVDRQTRIFF  300
SVSESVAAKI ELPDSFYSLS AMELKREAET RKKKIEDSQM LIPKSYKEKQ AKAAKKRYTK  360
TVIRVQFPDG VVLQGVFSPA EPTSALYEYV SLALKEPCLE FELLNPVAIK RRVIPHSPAA  420
GERAATLADE ELVPSALVKF KPIETDSIVF TGLCNELLEI SEPLGSGAAV APICPFLQFG  480
CAMNLICEV