PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G26212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 277aa MW: 31662.3 Da PI: 6.7135 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.2 | 7.5e-05 | 1 | 24 | 33 | 56 |
HHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRakek 56 +A++l+L+ +++++W qN +++++ Ro04_G26212 1 MARQLHLQPKKITYWIQNYKTRKR 24 699******************987 PP | |||||||
2 | START | 53.4 | 8e-18 | 171 | 274 | 71 | 174 |
CT-TT-SEEEEEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 71 qWdetlakaetlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 W et ++ +++ ++ + +al+ m+ae+ ++splvp R+ f+Ry rq ++ wv+v ++ + p+++s+ R pS +li+ +++g+sk Ro04_G26212 171 LWPETSRDSAVVLTVGVNeifnEALHEMTAEFHLPSPLVPvREHHFIRYFRQYYKDLWVVVYADLSAVFQDPTTKSYRR----PS-CLIQALPDGYSK 263 7999999999999998889999****************************************99998877776899988....77.89********** PP EEEEE-EE--S CS START 164 vtwvehvdlkg 174 vtwve++++++ Ro04_G26212 264 VTWVENAEVDD 274 ********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence |
MARQLHLQPK KITYWIQNYK TRKRVKFSRG ESDALREEIA KLHAKLKRCE EALANTTCLV 60 CGGPSIANKG LDCRSQVPVA GPNVEKGKSP LEFPEAFQQM REDFLHTKDG QDLVAKLVVA 120 AMEELVMMAC EGAPLWIPAK NDVPPNQPDI LNNVEYLRIF SRDPNHTPKK LWPETSRDSA 180 VVLTVGVNEI FNEALHEMTA EFHLPSPLVP VREHHFIRYF RQYYKDLWVV VYADLSAVFQ 240 DPTTKSYRRP SCLIQALPDG YSKVTWVENA EVDDEDI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 3e-49 | HD-ZIP family protein |