PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G25749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 213aa MW: 25334.7 Da PI: 11.0374 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5e-11 | 78 | 125 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 g+WT eEd +l+ +++++G g +Wk ++ g+ R+ k+c rw + Ro04_G25749 78 GPWTREEDYILLSYIQEHGHGrgHWKNLPKNAGLQRSIKSCGMRWTNN 125 79*******************************************986 PP | |||||||
2 | Myb_DNA-binding | 33.3 | 1.1e-10 | 132 | 175 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++ E+++++++++ +G+ W+ Ia+ + gRt++q+++ w++ Ro04_G25749 132 RESFSLGEQDIIIRLHTIYGNM-WSVIAKSLR-GRTDNQIRNLWHT 175 5678889***************.*********.*********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MFFCSSHFFY VYFFLIFYSF HIPSSFFFFF FQFLCKPSTI SFLRFQQKSV FLINQPSLKF 60 RLHLPLWQAL LTIILNIGPW TREEDYILLS YIQEHGHGRG HWKNLPKNAG LQRSIKSCGM 120 RWTNNLSPHL KRESFSLGEQ DIIIRLHTIY GNMWSVIAKS LRGRTDNQIR NLWHTRIRIR 180 LVQMGIDPRT PRLPRADLTL PPAPLHHHPP IVI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-43 | MYB family protein |