PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G25029
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 291aa    MW: 32817.9 Da    PI: 5.9429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G25029genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-2195143355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp     +  r++lg+f t+eeAa+a+++a+k+++g
  Ro04_G25029  95 YRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTPEEAARAYDEAAKRIRG 143
                  9*******.**********72....35************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MCGGAIISGF IETKRGRKLT AEDLWSELDT FSDLLGLDSS SNNQFLHNKL AQKPKDPNSF  60
TKVRSETKPK KTTSQVAEEE EEKTTKPKRV RKNMYRGIRQ RPWGKWAAEI RDPHKGVRVW  120
LGTFNTPEEA ARAYDEAAKR IRGDKAKLNF PPQPAPAPAQ LPPPPKKRCI GSESTQSSGV  180
LPAMMGYRPF QNEFYCKGEA AADDHEYELK EQISSLESFL GLDDEPVTPN EVVSGLGISE  240
PDSVDLWMLD GLVTYHQQQG HDQLMQSIYH TGDDNENYEE CMHLILMFKS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-51ERF family protein