PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G24702
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 408aa    MW: 45158.6 Da    PI: 6.5884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G24702genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-184999256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +gr++AeIrdp     +   r +lg+f+taeeAa a++ a+++++g+
  Ro04_G24702 49 RYRGVRRRP-WGRYAAEIRDP-----HtkERRWLGTFDTAEEAAYAYDDAARRMRGA 99
                 69*******.**********7.....335999***********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MEEAFRKLNG LTPTSEPDSI SVPPKKSTSP ATNKRSLKDA SAGSASSLRY RGVRRRPWGR  60
YAAEIRDPHT KERRWLGTFD TAEEAAYAYD DAARRMRGAK ARTNFVYPAT THDHLLPAFS  120
FHHQKQSQPS VKNFPANRGY GQYAPNWPPF AQFSNDFSGS GSERSGVTAA NTTAASLNML  180
FFRNFINNSS SSPNSSSILS PNPQAQTFTY NNQLQYMNGS SPNFSNSLAT TTSTTTSGSS  240
SSMITTASPA THHDLPLMDS STKTTTSQFV DSDFFPLESS DSGLLEEVIH QFFPKPSSNI  300
FSPPPKSAEY YNLPPTPASF DQTVEKKQAN QSCLGFCFDY QQQLEVPQQQ HGSFDGAEEV  360
AQQEAIPFYN DLPINFQMNG ADHSMAVMDH SMFQQYYYPE FVGGLQNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-14ERF family protein