PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G24163
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 304aa    MW: 32995.4 Da    PI: 7.5972
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G24163genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-203686256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Ro04_G24163 36 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 86
                 589******.7*********43...36**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MAGPELTKTS IATSTATATK AMSKSSSSSA KAALRRFVGV RQRPSGRWVA EIKDSSQRVR  60
LWLGTYDTPE EAARAYDEAA RALRGENART NFATPTVNPD NSSPLANSCP NPNGTFMPSG  120
LSDGRHGGGQ GLSFSSLKAK LSKNLQSIMA RSSDHHNKSS KSRVSDHFTF ASIFHFRKYQ  180
QYQNSPVNPL FDMKNMEKVV QPSIIVPHNG ETSTSTEPSS WESSSISDCS ADWGYSFRQP  240
GMDSDGSDLG DGIMDQIMGW MDSPDQMSSG AVGDDCDEEG SRSKRFKVSS SVMVPPTFTE  300
SPYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-16ERF family protein