PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G23789 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ARR-B | ||||||||
Protein Properties | Length: 696aa MW: 76049.1 Da PI: 6.6794 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.8 | 1.6e-25 | 212 | 262 | 1 | 52 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk Ro04_G23789 212 KPRVVWSVELHQQFVGAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQK 262 79*******************.*****************************9 PP | |||||||
2 | Myb_DNA-binding | 35.6 | 2.2e-11 | 214 | 262 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qk Ro04_G23789 214 RVVWSVELHQQFVGAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQK 262 678*********************************************8 PP | |||||||
3 | Response_reg | 76.7 | 8.3e-26 | 34 | 142 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll+ i e +lp+i+++a + ++ + + + Ga Ro04_G23789 34 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAEIALSLLRENKngYDVVISDVHMPDMDGFKLLEYIGLEM-DLPVIMMSADDGKSVVMKGVTHGAC 128 89*********************.***************999999**********************6654.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + Ro04_G23789 129 DYLIKPVRIEALKN 142 **********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence |
MNLNNGRSMS TASSSGAWKS ADAVSDQFPA GLRVLVVDDD PTCLMILEKM LRTCLYEVTK 60 CNRAEIALSL LRENKNGYDV VISDVHMPDM DGFKLLEYIG LEMDLPVIMM SADDGKSVVM 120 KGVTHGACDY LIKPVRIEAL KNIWQHVVRK KKNEWKDVEQ SGSVDEGDRQ QKPCEEPDYS 180 SSANEGNWKN SKKRKDEDED GEDRDDTSTL KKPRVVWSVE LHQQFVGAVN QLGIDKAVPK 240 KILELMNVPG LTRENVASHL QKNSPHKLME QKYRLYLRRL SGVSQHQSNL NNSFISSQEA 300 SFGAMSSLNG IDLQTLAVAG QLPAQSLATL QAAGLGRSTS KSGIPMPLVD QRNLFSFENP 360 KLRFAEGQQH HSSGKPMNLL HGIPTTMEAK QLANLHQSAQ SLGAVNMQVN PHGVQNSSLY 420 MIGQPQSRGQ ILNETTGTHV PRLPSSIGQP MVSNGIPSGV LGGRSGISDG GRGTGYNSVP 480 QNSSMMNFPL NNTAELPGNS YTLGSTQGMS SLTPKGSFPE EVNSEIKRSG GFVPSYDIFN 540 ELHQHKSNDW NLQNVGLTFD ASHHTNSVHG SLDSSGLVHQ GFSSSQRTAQ SRNPSNVGKA 600 MFPMGASTDH GHVQNTCQHL SNGLIVDNTV RIKSERHSDA TQNNFFHDQF GQEDLMSALL 660 KQQQGGVGPS ENEFDFDGYS LDNIPGFSSL HAVVLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 0.0 | ARR-B family protein |