PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G23784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | GATA | ||||||||
Protein Properties | Length: 148aa MW: 15925 Da PI: 10.3035 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.4 | 9.9e-19 | 36 | 70 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cgt+kTplWR gp g+k+LCnaCG++ rkk++ Ro04_G23784 36 CFDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 99******************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence |
MLDPNDKLSD QGSESEDMNL KNPNEGSSEE GQKRTCFDCG TSKTPLWRGG PAGPKSLCNA 60 CGIRSRKKRR AILGINKSGG GGADDNRKGK KSSSSNKQIG DGLKQRLLAL GRDVLMQRST 120 VERQRRKLGE EEQAAVLLMA LSYGSVSA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 91 | KKRRAILGINKSGGGGADDNRKGKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 3e-48 | GATA family protein |