PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G23456

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 823aa MW: 89033.8 Da PI: 6.7558

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G23456	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	7.9e-10	19	62	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a + ++ + +W++Ia+ + g+tl+++k+++ Ro04_G23456 19 WSREQDKAFENALATYPEDspdRWDKIAADVE-GKTLEEIKHHYE 62 ******************************.********95 PP
2	Myb_DNA-binding	24.4	7e-08	210	245	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Ro04_G23456 210 FLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 245 777899*****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence
MSNTTTKMTV EEAGSSSLWS REQDKAFENA LATYPEDSPD RWDKIAADVE GKTLEEIKHH 60 YELLVDDISQ IEAGCVPLPC YNSSSEGSTS LASDEGTSKK GGHTGHYSNE SNHGSKASRA 120 DQERRKGIAW TEDEHSYIVL PNTNCDEILI RWPHLVGRLA RIVGTPEREV FRKAVFLTNL 180 AMSSDSLLVQ SSVNLLYHLN KAKLSFTMQF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS 240 HAQKYFIRLN SMNKDRRRSS IHDITSVNNG EISAIQGPIT GQANGSVVGS SGSGKSTKQS 300 PGGPPGVGMY GAPSIGQPIG VSAVGTPVNL AGPPPHMAYG VRGPMPPGAL QFSIYCASSS 360 NTLWTVSEIA EAVSGRIVKW GPPGTISTDT RTLERNQWLF AIAGQNWDAH DFVTPELSDK 420 GCIGVIGNRV CENWDKGFVE IEGDSVVSLT KMARYARNRR FNGQVVGVTG SVGKTSTKSM 480 IALALQSLEN PVYQSHGNWN NRIGVALSLI GIPKNAGIIV VLEMGMSGKG EILELARMAE 540 PTVRVVLNVG ASHFHNFSSL EEIAMAKGEI LEEAKLGDVC VLNADDPLVM SLLPLPFGVQ 600 KVLFGQRMGC DVRLVECEST HGGLGVRVVL ENHKEMVEFV IPSPGLHLAL NACAAAAVAS 660 LLGVPLSQIG RCLSAFSPVK MRSELEVARN GVKIVNDVYN ANPVSTRAAI DSLKSIDCKG 720 KKIAILGDML ELGAIELEAH EMILKHCCSV DDIDLIGLVG KRFWTAARDM NMLKEVNIVC 780 ALEPETFAEE IVKRVNCNDV ILVKGSRGMQ MEKVVNAIKA MEI

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence

MSNTTTKMTV EEAGSSSLWS REQDKAFENA LATYPEDSPD RWDKIAADVE GKTLEEIKHH  60
YELLVDDISQ IEAGCVPLPC YNSSSEGSTS LASDEGTSKK GGHTGHYSNE SNHGSKASRA  120
DQERRKGIAW TEDEHSYIVL PNTNCDEILI RWPHLVGRLA RIVGTPEREV FRKAVFLTNL  180
AMSSDSLLVQ SSVNLLYHLN KAKLSFTMQF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS  240
HAQKYFIRLN SMNKDRRRSS IHDITSVNNG EISAIQGPIT GQANGSVVGS SGSGKSTKQS  300
PGGPPGVGMY GAPSIGQPIG VSAVGTPVNL AGPPPHMAYG VRGPMPPGAL QFSIYCASSS  360
NTLWTVSEIA EAVSGRIVKW GPPGTISTDT RTLERNQWLF AIAGQNWDAH DFVTPELSDK  420
GCIGVIGNRV CENWDKGFVE IEGDSVVSLT KMARYARNRR FNGQVVGVTG SVGKTSTKSM  480
IALALQSLEN PVYQSHGNWN NRIGVALSLI GIPKNAGIIV VLEMGMSGKG EILELARMAE  540
PTVRVVLNVG ASHFHNFSSL EEIAMAKGEI LEEAKLGDVC VLNADDPLVM SLLPLPFGVQ  600
KVLFGQRMGC DVRLVECEST HGGLGVRVVL ENHKEMVEFV IPSPGLHLAL NACAAAAVAS  660
LLGVPLSQIG RCLSAFSPVK MRSELEVARN GVKIVNDVYN ANPVSTRAAI DSLKSIDCKG  720
KKIAILGDML ELGAIELEAH EMILKHCCSV DDIDLIGLVG KRFWTAARDM NMLKEVNIVC  780
ALEPETFAEE IVKRVNCNDV ILVKGSRGMQ MEKVVNAIKA MEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-48	MYB family protein