PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G23114

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 479aa MW: 52469.3 Da PI: 6.6162

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G23114	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.2	1.5e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 C+ ++e+++ l+C+ ++ lC C ++ H g H Ro04_G23114 12 IPCDFCSEQPAVLYCKADSAKLCLFCDQHVH-GanllsrkH 51 57***************************99.435555555 PP
2	zf-B_box	25.2	3.5e-08	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++++ + C +++ lC++C +H + H+++p+ Ro04_G23114 54 SQICDNCASEPVAFRCSTDNLVLCHECDWDSHGScsvsaaHDRTPI 99 689*****************************55999999998876 PP
3	CCT	64.3	3.6e-22	431	474	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk++ Ro04_G23114 431 RGNAMLRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKAT 474 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MVSPKSGTGE GIPCDFCSEQ PAVLYCKADS AKLCLFCDQH VHGANLLSRK HVRSQICDNC 60 ASEPVAFRCS TDNLVLCHEC DWDSHGSCSV SAAHDRTPIE GFSGCPSPLE LASLWGLDLQ 120 GSKNSGRVDP TPNLNRDLDT SSSWTGLNFQ DLIVPNQNGG VYQNCGELIP AKRQRSGGIL 180 GKQKHGIQKQ LVELLRRDFD GGGENLEAPT PNSNGWQGND NANANAEGFD VESGRVDGVN 240 VGGATVTSQP LLQQQAPFTS LLMMAEGIVD RQMLWDTNPH THNTHNTHNT QIWDFNLGKL 300 RDHEETVPLD VAYGSSGSGF MIKNFSELLK EASVTDTKLF RDVYQMNCPI GQDDITFNNN 360 SNNPSASQGP ATSESNNFTV GRPSSGSAFC EDKGSGASKD THIMEQPFLI RSDSLRTVGT 420 KADMELLAQN RGNAMLRYKE KKKNRRYDKH IRYESRKARA DTRKRVKGRF VKATEAPDG

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MVSPKSGTGE GIPCDFCSEQ PAVLYCKADS AKLCLFCDQH VHGANLLSRK HVRSQICDNC  60
ASEPVAFRCS TDNLVLCHEC DWDSHGSCSV SAAHDRTPIE GFSGCPSPLE LASLWGLDLQ  120
GSKNSGRVDP TPNLNRDLDT SSSWTGLNFQ DLIVPNQNGG VYQNCGELIP AKRQRSGGIL  180
GKQKHGIQKQ LVELLRRDFD GGGENLEAPT PNSNGWQGND NANANAEGFD VESGRVDGVN  240
VGGATVTSQP LLQQQAPFTS LLMMAEGIVD RQMLWDTNPH THNTHNTHNT QIWDFNLGKL  300
RDHEETVPLD VAYGSSGSGF MIKNFSELLK EASVTDTKLF RDVYQMNCPI GQDDITFNNN  360
SNNPSASQGP ATSESNNFTV GRPSSGSAFC EDKGSGASKD THIMEQPFLI RSDSLRTVGT  420
KADMELLAQN RGNAMLRYKE KKKNRRYDKH IRYESRKARA DTRKRVKGRF VKATEAPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-110	CO-like family protein