PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G21525

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 1996aa MW: 221233 Da PI: 6.6285

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G21525	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.7	4.6e-40	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Ro04_G21525 147 VCQVEDCKADLSHAKDYHRRHKVCDMHSKATKAMVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 224 6**************************************************************************976 PP
2	SBP	127.8	4.2e-40	1146	1222	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adls+ak+yhrrhkvC +hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ Ro04_G21525 1146 VCQVEDCRADLSNAKDYHRRHKVCVMHSKASEALVGNAMQRFCQQCSRFHVLKEFDEGKRSCRRRLAGHNKRRRKTL 1222 6*************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1996 aa Download sequence
MEAFGGKPRN FYAPMVSDLK AVGKKSLEWD LNDWKWDGHL FTATPLNSIP SDFRSRQFFP 60 TGQETPSNAG WSNSSSSGSD DISPGNEKGK RELEKRRRAA ILEDEELNDE AGSLNLKLGG 120 QVYPISEGDV KTGKKTKIVG TTSNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATKAM 180 VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDTVVNG VSMNDERGSS 240 YLLITNSSDQ TKDQDLLSHL LRNLANLTGT VDGRNISALL QGSQGLLNGG ASVQTTQNVP 300 DMVFNGCDPS RPSVSTSKMD DCVNLEDHLE PIRQCSAVPV SDKLQKGISS VDGDFGSQVH 360 SGLKGTKSLS SRHSFPSKSV APEYGRIQLN DIDLNNTYDD SQDYLENLGN SHVPVNPGTN 420 SLGCPFWIQR DSLKSSPPQT SGNSDSTATQ SPSSSSGDAQ SRTDRIVFKL FGKDPNDLPF 480 VLRSQILDWL SHSPTDIESY IRPGCIILTI YLRLERSTWE ELCCHLGSSL VKLLDASNDP 540 FWKTGWVYTR VQHFVAFMYN GQVVLDTPLP LRSHKTCRIT CISPIAVSLS KRAQFVVKGF 600 NLSRSTTRLL CALEGKYLAQ ETCHDLINGA DTTVDDDGLQ CLRFSSSIPD VTGRGFIEVE 660 DHGLSSSFFP FIVAEQEVCS EICMLEDAIE AAETTDVQTE SEMMEAKNQA MDFIHELGWL 720 LHRSRVNFRL GCTDSKLDLF PFGRFRLLME FSMDHDWCAV VKKLLGILFE GTVDAGEYNS 780 IDLALLDMGL LHRAVQRNCK PMVEFLLRFV PDKGSDKPEL EQKQQLDRDI NGFLFKPDAV 840 GPMGLTPLHV AASTDGCEYV LDALTDDPGK VGIKAWKKAR DSTGLTPYDY ACLRGGYSYL 900 HIVQRKISKT ESSHVVLDIP GSILDKNTKQ KQSDGHKSSK VASFDTEKIE MKAIQGHCKL 960 CYQKLAYGSR RSLVYRPAML SMVAIAAVCV CVALLFKSSP EAFGAKARNF YGPVVSDLRA 1020 VGKRSLEWDL NDWKWDGDLF SASPLNSVLS ECRSRQLFPA VPETPSNAGF SNSSSSGSDD 1080 ISPGNENGKR EVEKRRRGVL VENEELNDEA RSLNLNLGGQ AYPIIEGEVN TGKKTKIVGT 1140 SSNRAVCQVE DCRADLSNAK DYHRRHKVCV MHSKASEALV GNAMQRFCQQ CSRFHVLKEF 1200 DEGKRSCRRR LAGHNKRRRK TLPDTAVNAG SLNDEIGSTN SSDQTKDQDL LSHLLRSLAN 1260 LSGTVDGRNI SALLQASQGL PNTGSSIKTA QKVPDTVSNV FEPSRPSVSA SSMDDCVIIE 1320 EHLRPIGQCL TVPASDTLQK IISSVDGDLG SQILSGLKAN KPLASRESAP TKSVIPEYGR 1380 IQLHEIDLNS PYDDSQDYLE NLGNSHVPIN PGIHHDSHKS SPPQTSGNSD STFTQSPSSS 1440 SGESQNRTDR IVFKLFGKDP TELPYVLRSQ IVDWLSHSPT EIESYIRPGC IILTVYLRLE 1500 KSTWEELCCH LGSSLKRLLD AANDPFWRTG WVYTRMQHFV AFMYNGQVVL DTPLPLKSHK 1560 SCRISSIKPI AVSLSEKAQF VVKGFNLPHS TTRLLCALEG KYLAQEACDD LMDGADTTVE 1620 HDELQCLRFS CSIPNVTGRG FIEVEDLGLS SSFFPFIVAE QEVCSEICML EDAIEAAETA 1680 DDIQAEPEIL EAKNQAMDFI HELGWLLHRS HVKYRLGHLD PNLDLFSFGR FKLLMEFSVD 1740 HDWCAVVKKL LELLFDSTVD AGEHPSVELA LLDMALLHRV VRRNFRPMVE LLLRFIPDKN 1800 LESEQKKHVE GEDNSFLFKP DGVGPLGLTP LHVAASIDGC EQVLDALTDD PGKVGIEAWK 1860 NARDSAGMTP YDYASMQGRY SYIHLIQRKI SKKLESGHVV VDIPGAILDS NSKHKQSDGH 1920 RSSKVASFDT EKFEIKALMR GDCKLCSQKL AYGSTRSLVY RPAMLSMVAI AAVCVCVALL 1980 FKSSLCQWEQ LKFGSS

Sequence ? help Back to Top

Protein Sequence Length: 1996 aa Download sequence

MEAFGGKPRN FYAPMVSDLK AVGKKSLEWD LNDWKWDGHL FTATPLNSIP SDFRSRQFFP  60
TGQETPSNAG WSNSSSSGSD DISPGNEKGK RELEKRRRAA ILEDEELNDE AGSLNLKLGG  120
QVYPISEGDV KTGKKTKIVG TTSNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATKAM  180
VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDTVVNG VSMNDERGSS  240
YLLITNSSDQ TKDQDLLSHL LRNLANLTGT VDGRNISALL QGSQGLLNGG ASVQTTQNVP  300
DMVFNGCDPS RPSVSTSKMD DCVNLEDHLE PIRQCSAVPV SDKLQKGISS VDGDFGSQVH  360
SGLKGTKSLS SRHSFPSKSV APEYGRIQLN DIDLNNTYDD SQDYLENLGN SHVPVNPGTN  420
SLGCPFWIQR DSLKSSPPQT SGNSDSTATQ SPSSSSGDAQ SRTDRIVFKL FGKDPNDLPF  480
VLRSQILDWL SHSPTDIESY IRPGCIILTI YLRLERSTWE ELCCHLGSSL VKLLDASNDP  540
FWKTGWVYTR VQHFVAFMYN GQVVLDTPLP LRSHKTCRIT CISPIAVSLS KRAQFVVKGF  600
NLSRSTTRLL CALEGKYLAQ ETCHDLINGA DTTVDDDGLQ CLRFSSSIPD VTGRGFIEVE  660
DHGLSSSFFP FIVAEQEVCS EICMLEDAIE AAETTDVQTE SEMMEAKNQA MDFIHELGWL  720
LHRSRVNFRL GCTDSKLDLF PFGRFRLLME FSMDHDWCAV VKKLLGILFE GTVDAGEYNS  780
IDLALLDMGL LHRAVQRNCK PMVEFLLRFV PDKGSDKPEL EQKQQLDRDI NGFLFKPDAV  840
GPMGLTPLHV AASTDGCEYV LDALTDDPGK VGIKAWKKAR DSTGLTPYDY ACLRGGYSYL  900
HIVQRKISKT ESSHVVLDIP GSILDKNTKQ KQSDGHKSSK VASFDTEKIE MKAIQGHCKL  960
CYQKLAYGSR RSLVYRPAML SMVAIAAVCV CVALLFKSSP EAFGAKARNF YGPVVSDLRA  1020
VGKRSLEWDL NDWKWDGDLF SASPLNSVLS ECRSRQLFPA VPETPSNAGF SNSSSSGSDD  1080
ISPGNENGKR EVEKRRRGVL VENEELNDEA RSLNLNLGGQ AYPIIEGEVN TGKKTKIVGT  1140
SSNRAVCQVE DCRADLSNAK DYHRRHKVCV MHSKASEALV GNAMQRFCQQ CSRFHVLKEF  1200
DEGKRSCRRR LAGHNKRRRK TLPDTAVNAG SLNDEIGSTN SSDQTKDQDL LSHLLRSLAN  1260
LSGTVDGRNI SALLQASQGL PNTGSSIKTA QKVPDTVSNV FEPSRPSVSA SSMDDCVIIE  1320
EHLRPIGQCL TVPASDTLQK IISSVDGDLG SQILSGLKAN KPLASRESAP TKSVIPEYGR  1380
IQLHEIDLNS PYDDSQDYLE NLGNSHVPIN PGIHHDSHKS SPPQTSGNSD STFTQSPSSS  1440
SGESQNRTDR IVFKLFGKDP TELPYVLRSQ IVDWLSHSPT EIESYIRPGC IILTVYLRLE  1500
KSTWEELCCH LGSSLKRLLD AANDPFWRTG WVYTRMQHFV AFMYNGQVVL DTPLPLKSHK  1560
SCRISSIKPI AVSLSEKAQF VVKGFNLPHS TTRLLCALEG KYLAQEACDD LMDGADTTVE  1620
HDELQCLRFS CSIPNVTGRG FIEVEDLGLS SSFFPFIVAE QEVCSEICML EDAIEAAETA  1680
DDIQAEPEIL EAKNQAMDFI HELGWLLHRS HVKYRLGHLD PNLDLFSFGR FKLLMEFSVD  1740
HDWCAVVKKL LELLFDSTVD AGEHPSVELA LLDMALLHRV VRRNFRPMVE LLLRFIPDKN  1800
LESEQKKHVE GEDNSFLFKP DGVGPLGLTP LHVAASIDGC EQVLDALTDD PGKVGIEAWK  1860
NARDSAGMTP YDYASMQGRY SYIHLIQRKI SKKLESGHVV VDIPGAILDS NSKHKQSDGH  1920
RSSKVASFDT EKFEIKALMR GDCKLCSQKL AYGSTRSLVY RPAMLSMVAI AAVCVCVALL  1980
FKSSLCQWEQ LKFGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein