PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G19854
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HB-other
Protein Properties Length: 376aa    MW: 42068.8 Da    PI: 4.9166
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G19854genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.56.9e-11177221953
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++ +e L ++F +n  ps++ +  L+k+lgL+ ++V+ WF+N R+
  Ro04_G19854 177 RNAVEKLRQVFSENELPSKAVKDNLSKELGLDPEKVSKWFKNTRY 221
                  578999*************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MLILGPAFPW IVLGRLSTLQ DVFKEEAAFP DGDEEWPSDE SDDDDYNPDR NVNSCSNSRE  60
GSDDNASDDE LSTDGSVGSD ESTDGDIVSG RRQRNSVDYK KLYDEMFGKD GPVLEQVSDD  120
EDWGPGKRKR REKESDAAST LMTLYESERN PDAVQTEVKN KPTPDMQVRR SCFRIPRNAV  180
EKLRQVFSEN ELPSKAVKDN LSKELGLDPE KVSKWFKNTR YLALKTRKAE GTKNIHTSTS  240
GINKESRYEN GTGKAADPMA SDSEDTSAET VDGMDLSDDV SLKKLLKGRT KEKRANIIAG  300
GGGESRVAEL EMERLCKVKG RLENMRQKLL KFQIAKTKKS KKSPLHEQSV IYVPVAELKE  360
KHLTSILDEI NEIGHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.13e-51HB-PHD family protein