PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G19707
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 292aa    MW: 32151.5 Da    PI: 7.5401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G19707genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-0581103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ C++ Fs++  L  H++ H
  Ro04_G19707  81 FKCNFCNRNFSTSQALGGHQNAH 103
                  89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MDRERPVVEV CANSSEASSK VKEINVVDEQ QQQKLEAEAE VEAEANLELA LYKPNPVEKG  60
SEEMNGVGGE QKKEKDDNRV FKCNFCNRNF STSQALGGHQ NAHKAERQMA KRRSQGLDVA  120
GGMALGLGHP YFPYNYLTPY SSTTLSPYYS QYGSRSTSLG VRLDSMIHKP SYTPWYDRLG  180
GGAGGSRPAS SSLLQNHPIK DHRLTFRGLQ NSSNTNELGF GARTTNASSR LEGTSSSSTS  240
DFRNFSATWN LNAIKNNNNP PLPPFSLLSR AERPPPKCDG INDDDIDLTL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-15C2H2 family protein