PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G19324

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CAMTA

Protein Properties

Length: 1006aa MW: 112545 Da PI: 7.1934

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G19324	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.9	2.6e-55	20	135	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwl+++ei++iL n+++++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqrr+y Ro04_G19324 20 QEsQQRWLRPTEICEILRNYQRFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSY 117 4559******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 w+L+++l++ivlvhy+ v Ro04_G19324 118 WMLDTHLQHIVLVHYRMV 135 *************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence
MAEMRKYLPN LQLDLVQILQ ESQQRWLRPT EICEILRNYQ RFQLTPDPPV RPPAGSLFLF 60 DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML 120 DTHLQHIVLV HYRMVEGNKS GVSRLLADPG SQVGSPQSAS VPCSSQANSP APTVQTSFAS 180 NPIKVDWNGQ TLSTEFEDVD SRSDAGASSL SQPMLEPVLN NACLHSPEVG GLSESFRNPP 240 GTWYAGPKAY QSSGSSDWTG MHSLTRNECS LHDQNLFVEN IKKNLFVEEL NGSDFITHKL 300 TDARLDGNSE VKDLTCEDRL TTDRDVQAVT AASLREAQDY SDPQTVVFST AQVSTAQVEK 360 SSKDGGVRRE PVELKKLDSF GRWMDKEIGV DCDDSLMASD SGNYWNTLEA ENGDREVSSL 420 SGHMQLDVDS LGPSLSQEQL FSICDFSPDW AYSGTETKVL IVGRFLGGKK NSTETKWGCM 480 FGEIEVSAEV LTDNVIRCRT PPHASGCVPF YVTCRNRLAC SEVREFEYRE PIGIAINSSR 540 EDELRFQIRL TKLLNLGSER KWLECSALDC DKCKLKSSIC TMRSNSGSDW VIADGASMAC 600 KSDHMTHRDV LIQNLLKDRL FEWLICKVHE EGKGPHVLDN EGQGVLHLAA ALGYEWAIGL 660 IVAAGVSPNF RDSRGRTGLH WASYFGREET VITLLRLGAA PGAVEDPTPA FPGGQTAADL 720 ASSRGHKGIA GYLAEADLTS HLSLLTVNEN TMDNVSATIA AEKAIETAET VSSDEALDDQ 780 NSLEGSLAAV RKSAHAAALI QATFRARSFH QRQLTQSNSD IPEASLDLVA LGSLKRVQKF 840 SHYEDYLHSA AALKIQQKYR GWKGRKEFLK IRNRIVTIQA HVRGHQVRKN YKKLVWSVGI 900 MEKVILRWRR KRPGLRGFRV EKTIEDESSE NKRSDDYEFL SVGRKQKFAG VEKALARVRS 960 MSRHPEAREQ YMRLQSKFEK LKMADRGSGA SNQIDGLVKT IKEEDH

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence

MAEMRKYLPN LQLDLVQILQ ESQQRWLRPT EICEILRNYQ RFQLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DTHLQHIVLV HYRMVEGNKS GVSRLLADPG SQVGSPQSAS VPCSSQANSP APTVQTSFAS  180
NPIKVDWNGQ TLSTEFEDVD SRSDAGASSL SQPMLEPVLN NACLHSPEVG GLSESFRNPP  240
GTWYAGPKAY QSSGSSDWTG MHSLTRNECS LHDQNLFVEN IKKNLFVEEL NGSDFITHKL  300
TDARLDGNSE VKDLTCEDRL TTDRDVQAVT AASLREAQDY SDPQTVVFST AQVSTAQVEK  360
SSKDGGVRRE PVELKKLDSF GRWMDKEIGV DCDDSLMASD SGNYWNTLEA ENGDREVSSL  420
SGHMQLDVDS LGPSLSQEQL FSICDFSPDW AYSGTETKVL IVGRFLGGKK NSTETKWGCM  480
FGEIEVSAEV LTDNVIRCRT PPHASGCVPF YVTCRNRLAC SEVREFEYRE PIGIAINSSR  540
EDELRFQIRL TKLLNLGSER KWLECSALDC DKCKLKSSIC TMRSNSGSDW VIADGASMAC  600
KSDHMTHRDV LIQNLLKDRL FEWLICKVHE EGKGPHVLDN EGQGVLHLAA ALGYEWAIGL  660
IVAAGVSPNF RDSRGRTGLH WASYFGREET VITLLRLGAA PGAVEDPTPA FPGGQTAADL  720
ASSRGHKGIA GYLAEADLTS HLSLLTVNEN TMDNVSATIA AEKAIETAET VSSDEALDDQ  780
NSLEGSLAAV RKSAHAAALI QATFRARSFH QRQLTQSNSD IPEASLDLVA LGSLKRVQKF  840
SHYEDYLHSA AALKIQQKYR GWKGRKEFLK IRNRIVTIQA HVRGHQVRKN YKKLVWSVGI  900
MEKVILRWRR KRPGLRGFRV EKTIEDESSE NKRSDDYEFL SVGRKQKFAG VEKALARVRS  960
MSRHPEAREQ YMRLQSKFEK LKMADRGSGA SNQIDGLVKT IKEEDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.2	0.0	CAMTA family protein