PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G17560

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 367aa MW: 41495.1 Da PI: 7.3573

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G17560	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.6	2.6e-12	54	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Ro04_G17560 54 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 110 57*****************99998898888888******************98 PP
2	AP2	51.2	3.2e-16	153	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Ro04_G17560 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 204 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MAKLSHQNQK TNANNSNAST TAVNNANAAN KTVVTKVKRT RRSVPRDSPP QRSSIYRGVT 60 RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLV 120 TYHKEMNEME SQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL 180 YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNGPNNDII GHTTNPNVEA 240 KLVADVTQNP IDHQGQTGLG FFHNLAYNPP EETMMTQLPR PTTATSALGL LLQSSKFKEM 300 MEMTSATDSS MTSSSPPELD LPQCMFPDDI QTYFDCQDST SYGEVDDAMF SELNSFIPSM 360 FQCDFTV

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MAKLSHQNQK TNANNSNAST TAVNNANAAN KTVVTKVKRT RRSVPRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLV  120
TYHKEMNEME SQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNGPNNDII GHTTNPNVEA  240
KLVADVTQNP IDHQGQTGLG FFHNLAYNPP EETMMTQLPR PTTATSALGL LLQSSKFKEM  300
MEMTSATDSS MTSSSPPELD LPQCMFPDDI QTYFDCQDST SYGEVDDAMF SELNSFIPSM  360
FQCDFTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-93	AP2 family protein