PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G15170
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 300aa    MW: 34799 Da    PI: 9.9483
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G15170genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.51.4e-321152491128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 
                  lp G+rF+P d+elv +yL +k+ g++ ++++vike+d+++++P +Lp +  ++ ++ +e y+F++ ++ y++ gk ++r+tk gyWk t + k+v+ 
  Ro04_G15170 115 LPTGYRFSPDDDELVLFYLVNKILGRTQPITDVIKEIDLFEHDPDQLPlEdyRHGTKCNEAYYFTNLEQIYSSeGKVTRRSTKGGYWKVTSEGKQVKY 212
                  699*********************************************6533444455599*********9963677777****************99 PP

          NAM  95 k.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                    ++  vg k+++ f+kg   apkg+ ++ vmheyr+
  Ro04_G15170 213 GdDNVIVGFKTSMFFHKGqpPAPKGSISRFVMHEYRV 249
                  756667**********9944578999*********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MQDIMVILFL NSIVFYTKPR HCPKPRQKNR NRQRTDVDLF FSRRRLTTPT KSQRKKHVRT  60
SLTNSSKPLR DQMFNWVFAI FFMAFSPSAS QKKQDFDLLK CSKIDVGKKE EELKLPTGYR  120
FSPDDDELVL FYLVNKILGR TQPITDVIKE IDLFEHDPDQ LPLEDYRHGT KCNEAYYFTN  180
LEQIYSSEGK VTRRSTKGGY WKVTSEGKQV KYGDDNVIVG FKTSMFFHKG QPPAPKGSIS  240
RFVMHEYRVN PTIVPVDVLN DSIRAKIERF VVCKIVSKAA HPTYELPPEL LSLGEDGKSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-27NAC family protein