PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G15164
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 330aa    MW: 35682 Da    PI: 6.312
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G15164genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.8e-32152209259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Ro04_G15164 152 EDGYRWRKYGQKAVKNSPYPRSYYRCTNSKCTVKKRVERSSEDPTTVITTYEGQHCHH 209
                  8******************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDNRHPGPTD FTTESTWPLD SDSAYFFTDE RDTTVLSEFG WNFNPDDPIG AEERSDLAGS  60
TSTLVDQLPE NSSSSSALRS SDPAPVLGSA STNQSVSSSS SGDLPERSTG SGGNPPPEIP  120
SSTTKANKKK VQKRIRQPRF AFVTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTNS  180
KCTVKKRVER SSEDPTTVIT TYEGQHCHHT VAFPRGGGVN IISHDQSGFS AAAGGRGQLM  240
QLPPVSQFMY YPTSIQPRSQ LSPSNNLTLG GSQSYRLVSA GSTAHYHDQA AGGSQSTTNP  300
DEPIPVVTVP TDEGLLGDIV PPGMRNPFDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.27e-66WRKY family protein