PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G13532

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 353aa MW: 40819.7 Da PI: 5.3401

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G13532	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.3	8.9e-37	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+yei++d+++++++sws+++n+fvv+d++ fa ++LpkyFkh nf+SFvRQLn+YgF+kv++++ weF+h++F +g+k+ll++i+ Ro04_G13532 27 FLNKTYEIVNDSTTNHIVSWSRENNTFVVWDPHAFAISLLPKYFKHGNFSSFVRQLNTYGFRKVDTDK---------WEFAHEEFLRGQKHLLKNIR 114 9******************999*************************************999.........****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++++ Ro04_G13532 115 RRRTS 119 *9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MNPQGQVKEA PLPVPVEGLN HQGPPPFLNK TYEIVNDSTT NHIVSWSREN NTFVVWDPHA 60 FAISLLPKYF KHGNFSSFVR QLNTYGFRKV DTDKWEFAHE EFLRGQKHLL KNIRRRRTSH 120 NIPHASQQTL DSCIEVGSFG SLDGEIDQLR RDKEVLMGEL VKLRQQQQTT RAHVHGLEDR 180 LKRTEVKQQQ MMNFLARAMQ NPNFVQQLVQ KKDRKKQLEE AIAKKRRRFI SGHSSVEVGE 240 LGQDESYPKV EPQHYGDISE LDVSELDKFA MDMQGTDENQ RVHGGQECVE TEEEHESRGK 300 DLCEGFWKEL LNDVVDEEIE VLGVQEEDEE DISVLIEQLG CLVSEPKTDY QSK

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MNPQGQVKEA PLPVPVEGLN HQGPPPFLNK TYEIVNDSTT NHIVSWSREN NTFVVWDPHA  60
FAISLLPKYF KHGNFSSFVR QLNTYGFRKV DTDKWEFAHE EFLRGQKHLL KNIRRRRTSH  120
NIPHASQQTL DSCIEVGSFG SLDGEIDQLR RDKEVLMGEL VKLRQQQQTT RAHVHGLEDR  180
LKRTEVKQQQ MMNFLARAMQ NPNFVQQLVQ KKDRKKQLEE AIAKKRRRFI SGHSSVEVGE  240
LGQDESYPKV EPQHYGDISE LDVSELDKFA MDMQGTDENQ RVHGGQECVE TEEEHESRGK  300
DLCEGFWKEL LNDVVDEEIE VLGVQEEDEE DISVLIEQLG CLVSEPKTDY QSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	117	RGQKHLLKNIRRRR
2	214	228	RKKQLEEAIAKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-122	HSF family protein