PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G13301

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 387aa MW: 43545.9 Da PI: 6.1368

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G13301	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l++ v+ +G g+W++++r+ g+ R+ k+c+ rw++yl Ro04_G13301 13 KGLWSPDEDDKLIKHVTTHGHGSWSSVPRHAGLERCCKSCRMRWRNYL 60 678********************************************7 PP
2	Myb_DNA-binding	49.5	9.5e-16	66	107	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T eE+++++d+++ lG++ W+ Ia+++g Rt++++k++w+ Ro04_G13301 66 RGSFTSEEEQIIIDVHRILGNR-WAQIAKHLG--RTDNEVKNFWN 107 89******************.****8..********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGRRCCGEHN VKKGLWSPDE DDKLIKHVTT HGHGSWSSVP RHAGLERCCK SCRMRWRNYL 60 RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLGRTDN EVKNFWNSSI KKKLVSQGLD 120 PQTHNLISSH NRSAASNKIA GSNTKSQPHI DQKRPVLFTV NNISQLIDSS TEINYSISQP 180 IVPVSSAQPP TVQPIMATPT DNQYLVQNPN SGWTSVSDIF PDITLNISSA SSSTEFGHLD 240 DSNCIWAAGA EEAEPFEVAP RAMDLQGEQS KGQVVQVQQE KDKFLEIQMK AIQDMDISAS 300 FDQSSIFDFS LVEYYSTLMS GVMPKDQLLP LPNPFSSVFP SVPSSSRLFS SWDEKMLDFY 360 EIKRDSIPEL GTWKTFRLTD SDELIEG

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGRRCCGEHN VKKGLWSPDE DDKLIKHVTT HGHGSWSSVP RHAGLERCCK SCRMRWRNYL  60
RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLGRTDN EVKNFWNSSI KKKLVSQGLD  120
PQTHNLISSH NRSAASNKIA GSNTKSQPHI DQKRPVLFTV NNISQLIDSS TEINYSISQP  180
IVPVSSAQPP TVQPIMATPT DNQYLVQNPN SGWTSVSDIF PDITLNISSA SSSTEFGHLD  240
DSNCIWAAGA EEAEPFEVAP RAMDLQGEQS KGQVVQVQQE KDKFLEIQMK AIQDMDISAS  300
FDQSSIFDFS LVEYYSTLMS GVMPKDQLLP LPNPFSSVFP SVPSSSRLFS SWDEKMLDFY  360
EIKRDSIPEL GTWKTFRLTD SDELIEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	3e-76	MYB family protein