PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G12651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20908.1 Da PI: 9.4654 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.4 | 1.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k++rqvtfskRr g++KKA ELSvLC++ev +++fs +g+lye++s Ro04_G12651 9 KRIEDKIRRQVTFSKRRSGLIKKARELSVLCGVEVGLVVFSAKGRLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 44 | 9.5e-16 | 98 | 169 | 27 | 98 |
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++L+ q l +++e+L++ eL +Le+qL+ l++iRs+K++l++e + l +kek+l eenk+Lr+k Ro04_G12651 98 ANKSLKMIQSELEAQNIENLDVTELTELETQLDALLRQIRSRKTQLMMETVTALIEKEKKLIEENKYLREKE 169 57788888888999*******************************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MGRGKVQLKR IEDKIRRQVT FSKRRSGLIK KARELSVLCG VEVGLVVFSA KGRLYEFCSG 60 DSLGNVLERY QIHNEEEVAN PKNGKKHHLE SSGNGTGANK SLKMIQSELE AQNIENLDVT 120 ELTELETQLD ALLRQIRSRK TQLMMETVTA LIEKEKKLIE ENKYLREKEE PHCSTFISFV 180 AFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 3e-41 | MIKC_MADS family protein |