PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12430
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 133aa    MW: 14621.3 Da    PI: 7.5098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12430genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-202272255
          AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+++AeIrd  + ng  +r++lg+f taeeAa+a+++a+ +++g
  Ro04_G12430 22 RYRGVRRRP-WGKFAAEIRDS-NrNG--ARVWLGTFNTAEEAARAYDRAAYAMRG 72
                 6********.**********4.4254..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MAEDHRGGGK VMGESKDAGE VRYRGVRRRP WGKFAAEIRD SNRNGARVWL GTFNTAEEAA  60
RAYDRAAYAM RGSLAILNFP HEYPSGSTGG SSSSASSSSS MPTGNQVLEL EYLDDKLLEE  120
LLDCEETKPK KKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-26ERF family protein