PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G12429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17844.4 Da PI: 8.866 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.6e-20 | 18 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps +g +r +lg+f+taeeAa+a+++a+ +l+g+ Ro04_G12429 18 RYRGVRRRP-WGKFAAEIRDPSRQG--ARQWLGTFDTAEEAARAYDRAAFNLRGH 69 6********.**********96543..**************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MEDSRKGKEE KTGREEVRYR GVRRRPWGKF AAEIRDPSRQ GARQWLGTFD TAEEAARAYD 60 RAAFNLRGHL AILNFPNEYY SRVMGSPPHP PRFQSSFSSS SSSSSSSSAA ATASSTAGGS 120 FERGSSSSAG QRTQVFEFEY LDDKVLEDLL DWEEEKRSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-33 | ERF family protein |