PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12427
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 312aa    MW: 34325 Da    PI: 9.5012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12427genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.4e-1755105255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  Ro04_G12427  55 SYRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAAFAMRG 105
                  69*******.**********422...25*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MLLFGMLSKA TQETTSIETE THNSAASSNP IKEEEVSSGS TSEEENPKNP KKEKSYRGVR  60
RRPWGKFAAE IRDSTRHGIR VWLGTFDSAE AAALAYDQAA FAMRGSAAVL NFPVERVRES  120
LRDMNCATLD LDGGCSPVVA LKRKHSMRRK MGNKKSRAEG DGRLENVVVF EDLGADYLEQ  180
LLSSSEVRVV VKNSDGKLDL DDRSYVYKTQ SIAALSCVID YQPALRTLTL MSMSNARKGY  240
PKGLEKTRVW LLVWRRPNVD GGFQPPWAVT GAVGQAGLDG VVKEMAGGHA PDLVSLHQPP  300
KSIFSRLSIL AH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-54ERF family protein