PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G08877
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 273aa    MW: 29711.3 Da    PI: 5.2798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G08877genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-194089255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Ro04_G08877 40 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 89
                 678******.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MEYFTNSSSK GGNSPSSSSS KSKKKPQQQQ PQQQQQQETR FLGVRRRPWG RYAAEIRDPS  60
TKERHWLGTF DTAEEAALAY DRAARSMRGS KARTNFVYSD MPHGSSVTSI ISPDESQRDM  120
SAFFTAPPQT QTQMMTNQNS HQQQQQQQQP FFSQDPFDAY PFSGGSYGVG SYGPGSGCGV  180
ADGAGSHDNE LPPLPPSVSS TCYGPAEVMG SDFYGFSEPT ATHGFDSLTS GSYMGFDSNE  240
FVQHSPLFGS MPPVSDSGID GFDLGTLLFG FKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.16e-34ERF family protein