PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G08859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 27458.8 Da PI: 6.7299 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.3e-20 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa a+++a++k++g Ro04_G08859 48 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAAIAYDNAALKFKG 97 7********.**********94....45************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MSAMVSALTQ VIGTPEEDNK VQSNPSVKDE PDRSQPVQDQ ESTVRRRHYR GVRQRPWGKW 60 AAEIRDPKKA ARVWLGTFET AEDAAIAYDN AALKFKGTKA KLNFPERVQG NSSFVMQGSS 120 GTTGSSSTVS TERNLGRPAA TVSHHHPAPP LIAPSQQQQE SSSFPDLYQY AQLLQSNDVD 180 FSSNYQYPSN PFNQDYHPAF STAPQFSPST YYPSHHQQQG QQDEHGQEDQ YDNKDWNRRN 240 PSEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 4e-29 | ERF family protein |