PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G08839
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 325aa    MW: 36709.2 Da    PI: 5.099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G08839genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-1363159193
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE.EEEE-SS.SEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfv.vFkldgr.sefe 91 
                  f+k+l +sdv++ gr+vlpkk +e+h    + ++e++ + + d +  ++W++k+++ +++ +r+++ ++ keFv ++gL++gD+v vFk   + ++++
  Ro04_G08839  63 FEKKLHQSDVGRAGRIVLPKKLVEDHlpyLLCTKEGVWMHVDDMDYyKVWTLKFRFwQNNTSRIYIFDNAKEFVTSHGLNVGDSVkVFK---DiMTES 157
                  99*************************99444556778888885556*******98555666688888***************995566...445555 PP

                  .E CS
           B3  92 lv 93 
                  ++
  Ro04_G08839 158 YL 159
                  55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MAGVSYNIIN VEGDCQMMIT GKNIPESSSI CPRTTSSRMS QEGGSSSRKR TLYIDPTMTK  60
FLFEKKLHQS DVGRAGRIVL PKKLVEDHLP YLLCTKEGVW MHVDDMDYYK VWTLKFRFWQ  120
NNTSRIYIFD NAKEFVTSHG LNVGDSVKVF KDIMTESYLI RAVKSSCVPS LTDEQCLLRS  180
KENDSLFLNH PEHDSINKNE QVQSAPEPLE NNDVVLNQEP EKIINNEEEL QLSELASTIS  240
LGGSSHESNP QPTGNSSPKA YNESFPPLDD SLGCPPPYYG NLSGQLNDFD LYGTTGMVNP  300
IGEPLYRQHH RRSPSIESIT FSIWD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-33B3 family protein